PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G558600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 387aa MW: 41446.9 Da PI: 8.5451 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 7.5e-32 | 25 | 78 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR Sevir.9G558600.1.p 25 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 78 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.653 | 21 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-31 | 21 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-16 | 23 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-24 | 25 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-10 | 26 | 77 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 387 aa Download sequence Send to blast |
MTMVRTVVGR ERSGGVRQYN RSKVPRLRWT PDLHHCFVHA IHKLGGQDKA TPKRVLQLMG 60 VGGLTISHVK SHLQMYRNMR NDLGMQGSMQ VHRADHQEHI YGSGGMHIEL CNGMQQQCDH 120 ECDGPCCICR HSPKPRKEPM LPLHPQLKRT EPRREREEED YGSASPKSLL RGPGICESDG 180 SWCRALAAAA AAAAGGYNYM RVMQAAMGMA APLPPHAEPE VEPRGGAGIK RQQQQRPAAA 240 DGEHAAPPPP PSDSKLFTFL GFVVAPGPPQ PACCSSSRDH PFEIAGRNPT QSVTTTASRL 300 QCSSLGTPSH KAVERRAAYN PPRPSSAHDC GGCSLSLSLA LDAGSGGQCC TYSGEEGSLL 360 SSTTSATSGS RISLDLSLST LHPSSN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 26 | 80 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G558600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT068910 | 1e-100 | BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698081.1 | 0.0 | uncharacterized protein LOC101766248 | ||||
TrEMBL | K4AB70 | 0.0 | K4AB70_SETIT; Uncharacterized protein | ||||
STRING | Si036127m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-27 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G558600.1.p |