PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G557300.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 917aa MW: 102263 Da PI: 5.3117

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G557300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.4e-28	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Sevir.9G557300.3.p 597 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 647 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.006	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-26	599	647	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	7.1E-24	815	899	No hit	No description
SuperFamily	SSF54277	1.3E-21	816	898	No hit	No description
PROSITE profile	PS51745	22.045	818	901	IPR000270	PB1 domain
SMART	SM00666	5.4E-22	818	901	IPR000270	PB1 domain
CDD	cd06407	3.38E-40	819	900	No hit	No description
Pfam	PF00564	1.7E-15	819	899	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MEQPAAQKDE DGLLGYAVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGP GASPGACFSP 60 LFDICSTTTT ATPPAPAGDD DRDDTERPEA RRAWLFQPRQ EVEATVKERM RRALERIAQT 120 HPGELLAQVW VPTLIGDRQV LTTCGQPFWL DSRNQRLANY RSVSMKYQFS ADESACAELG 180 LPGRVFVGRV PEWTPDVRYF STEEYPRVHH AQFFDIRGSV ALPIFEPRSR ACLGVVELVM 240 TTQKVNYNAE IENICSALKE VDLRSTDVSS DPHANVSLNV ADTSYRAIVP EIIDVLRTVC 300 ERHELPLAQT WIPCICQAKR GSRHSDEKFK YCVSTVDEAC YIRDPNVTGF HQACSDHHLF 360 RGEGVVGRAF GTNEPCFATD VTAYSKAQYP LSHHAKLFNL KAAVAIRLRS IRTGSLDYVL 420 EFFLPVDCIE SEEQRAMLNS LSITIQQTCY TLRVVSLKEL VDEGSFETST VTPAEFYEKP 480 IHENLDEVCS NIEVPVRTTS LETSEEVTSW IASLVDAQSK GVKEMDGDLP FGFSKQEDEG 540 FSVTAGWHTP PVLGPKGTIF SGFKHHEEYE VKEPICSRHP SPSNLDKTVE KRRTKMEKTV 600 SLEELRKHFA GSLKEAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVGHS LKKLQMVIDS 660 VHGAEGTVQL SSLYENFTKT TWSERELQGD GTYPLSEQKG HLEPSVPDRQ CEGRFTSHTS 720 GSNSMSPSCS QSSNSSHGCS SGSKSQQNGS APQLAVKQEV FMEENQSSTL LKAASHAELQ 780 MFTEERPVTL PRSESQMLLS ELKPVENMSG MQKSKPESLK IKAMYGEERC IFRLQPSWGF 840 EKLKEEIVKR FSIGQEMYVD LKYLDDESEW VLLTCDADLL ECIDVYKSSS AQTVRILVNA 900 NVQPVLGPSF GQTGLS*

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MEQPAAQKDE DGLLGYAVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGP GASPGACFSP  60
LFDICSTTTT ATPPAPAGDD DRDDTERPEA RRAWLFQPRQ EVEATVKERM RRALERIAQT  120
HPGELLAQVW VPTLIGDRQV LTTCGQPFWL DSRNQRLANY RSVSMKYQFS ADESACAELG  180
LPGRVFVGRV PEWTPDVRYF STEEYPRVHH AQFFDIRGSV ALPIFEPRSR ACLGVVELVM  240
TTQKVNYNAE IENICSALKE VDLRSTDVSS DPHANVSLNV ADTSYRAIVP EIIDVLRTVC  300
ERHELPLAQT WIPCICQAKR GSRHSDEKFK YCVSTVDEAC YIRDPNVTGF HQACSDHHLF  360
RGEGVVGRAF GTNEPCFATD VTAYSKAQYP LSHHAKLFNL KAAVAIRLRS IRTGSLDYVL  420
EFFLPVDCIE SEEQRAMLNS LSITIQQTCY TLRVVSLKEL VDEGSFETST VTPAEFYEKP  480
IHENLDEVCS NIEVPVRTTS LETSEEVTSW IASLVDAQSK GVKEMDGDLP FGFSKQEDEG  540
FSVTAGWHTP PVLGPKGTIF SGFKHHEEYE VKEPICSRHP SPSNLDKTVE KRRTKMEKTV  600
SLEELRKHFA GSLKEAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVGHS LKKLQMVIDS  660
VHGAEGTVQL SSLYENFTKT TWSERELQGD GTYPLSEQKG HLEPSVPDRQ CEGRFTSHTS  720
GSNSMSPSCS QSSNSSHGCS SGSKSQQNGS APQLAVKQEV FMEENQSSTL LKAASHAELQ  780
MFTEERPVTL PRSESQMLLS ELKPVENMSG MQKSKPESLK IKAMYGEERC IFRLQPSWGF  840
EKLKEEIVKR FSIGQEMYVD LKYLDDESEW VLLTCDADLL ECIDVYKSSS AQTVRILVNA  900
NVQPVLGPSF GQTGLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	111	RQEVEATVKERMRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G557300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698188.1	0.0	protein NLP1 isoform X1
Refseq	XP_012698189.1	0.0	protein NLP1 isoform X1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	K4A5H9	0.0	K4A5H9_SETIT; Uncharacterized protein
STRING	Si034133m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G557300.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]