PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G555600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 34366.7 Da PI: 7.0344 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.8 | 2.2e-49 | 11 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yL++ v+gkkl++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ Sevir.9G555600.1.p 11 PGFRFHPTEEELLDFYLAHMVHGKKLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIR 100 9*************************99.99***************99999**************************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++++glkktLvfy+grap+g+ktdWvm+eyrl Sevir.9G555600.1.p 101 SSenAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 137 98666777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-58 | 4 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.993 | 9 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-25 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MASMEVEQDL PGFRFHPTEE ELLDFYLAHM VHGKKLHFDI IGTLNIYRHD PWDLPAMAKI 60 GEREWYFFVP RDRKAGSGGR PNRTTERGFW KATGSDRAIR SSENAKRVIG LKKTLVFYQG 120 RAPRGTKTDW VMNEYRLPDY GTGRGAPPPP QEDMVLCKIY RKATPLKELE QRASAMEEMQ 180 RRSDAAHYTA RASLTQASAS AGDDYLSSDD SFLFPSASSS PPSGDSYSAH KEAKQEAAEA 240 TVTVASTSLM QAANMAVMQP PAVRHGDLPT LQVPTNHGAL DWMQDLSQLR SPWQDQFFLS 300 PLANLLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 11 | 164 | 22 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G555600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 0.0 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985821.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q10S65 | 1e-145 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | K4AD00 | 0.0 | K4AD00_SETIT; Uncharacterized protein | ||||
STRING | Si036757m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 6e-85 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G555600.1.p |
Publications ? help Back to Top | |||
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