PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G542600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 1510aa    MW: 166038 Da    PI: 6.2457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G542600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004213991424123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          ++C    C+++F ++ +L+ H r+ +
  Sevir.9G542600.1.p 1399 FQCDidLCDMTFETRAELNAHKRNiC 1424
                          899999****************9877 PP
2zf-C2H212.50.0004614241446323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          C+   Cgk+Fs++ +LkrH+ +H
  Sevir.9G542600.1.p 1424 CTdeSCGKRFSSHKYLKRHQCVH 1446
                          77778***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.5E-122667IPR003349JmjN domain
PROSITE profilePS5118313.4812768IPR003349JmjN domain
PfamPF023754.4E-132861IPR003349JmjN domain
PROSITE profilePS5118434.782221390IPR003347JmjC domain
SMARTSM005583.0E-47221390IPR003347JmjC domain
SuperFamilySSF511976.32E-27227386No hitNo description
PfamPF023732.1E-36254373IPR003347JmjC domain
SMARTSM003553413991421IPR015880Zinc finger, C2H2-like
SMARTSM003552.314221446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.92314221451IPR007087Zinc finger, C2H2
PROSITE patternPS00028014241446IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-614281452IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-1014381480No hitNo description
SMARTSM003550.00114521476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.07114521481IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-1014531476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014541476IPR007087Zinc finger, C2H2
SuperFamilySSF576679.11E-914701505No hitNo description
Gene3DG3DSA:3.30.160.609.0E-1014771504IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.7914821508IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15714821509IPR007087Zinc finger, C2H2
PROSITE patternPS00028014841508IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1510 aa     Download sequence    Send to blast
MSPPPAVEAG GPGETPVPAW LRGLPRAPEY RPTESEFADP IAFLSRVERE AAAYGICKVI  60
PPYPRPSRRF VFAHLNRSLT SSSDAANPAL SGSSSSTAPS RPESAAVFTT RHQELGTPRR  120
GRPPPQVLKQ VWQSGEQYTL EQFEAKSRAF SKIHLAGLRE PTPLEVESLF WKVSADRPIY  180
IEYANDVPGS GFAAPPQSRH RKKRRREGDQ VEEGEKGSGW RLSGSPWNLQ AIARAPGSLT  240
RFMPDDVPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGAPKTWYAV PGDRASELEE  300
VIRVHGYGGN PDRLASLAVL GEKTTLMSPD VLVARGVPCC RLVQYPGEFV VTFPRAYHIG  360
FSHGFNCGEA ANFATPQWLK FAKDAAVRRA VMNYLPMLSH QQLLYLLAVS FITRTPSVLS  420
GIRTSRLRDR RKEERELLVK QEFLQDMINE NKLLCSFLKK KSIDNVVLWE PDLLPSSTVL  480
NSCSSGSKAP EKKSEDGCRI ESSQCNHKDN SSPDGSALMT GAQTKCTSAN SKSSDAASAS  540
VEKSDADIDD EDDLPFDLSI DSGSLTCVAC GILGYPFMAI LQPSKEALEG ISPVHRERSK  600
LSFEKEKNSN VFPCCPAGGN FGSSFVPNRT SCSVEQSCLA TPVEQTNINP QNVNSHKDIS  660
LTENELAGPV QQHSDSSHSC RSENTLHSCS NRGKSDNTIP KDSLGPEVKQ TGRGDIDVQA  720
VESCDGTISW NTSSTFARPR IFCLQHALEI EELLEGKGGV RALIICHSDY IKLKALAISI  780
AEEIEFQFDC TDVPLANASK SDLHLINISI DDEGHEEDGR DWTSQMGLNL KYCAKLRKET  840
SGIRDQSPLS VWELFSNPSP VSVVPNLKWL CRKARTPYKV IGIITSSGTS AAAEEVKPEV  900
KKETCTTGNG NVHEDDSRQH ISQQSGLVQP SGLHDSDDRE NKSSCLEEND HDRHCLIDIP  960
IAVAEYPMKH QVCEGAVGVS TCNDTICSSD SQDSSPLATS PVDVTRYQGC IQSTELSSSS  1020
TFSVRQFLND ESTSVEGSMN CMSNHEYLQS QDVTLQCRDE CLQVQQDQEE MRLCNNSNRT  1080
SVDPCLKEDL VISEEKHGSN VSAALENEHD CAKTSKCSYK TNESAAVNQL KTHDAGAVPE  1140
KQKSSCDEMT CGSADVQCSI TFGCLGSADV PGSTQPQLVP HDLMSDELQV DSHHCVVKAV  1200
EPKSNNSAKH ESPQIDNLIL EDAQAAATTA IPGHDGKSVH AGSNSFDILL GALAEESKVT  1260
DAPGKDEVGK ASLTLMTLAS NDHSADEIAE GKVVEVAKTN TIFGATKDDE QVDRPHDFHL  1320
SDVVSRSIGN SNRTEIICYV RRKHKRKKDS QSNTDSSQSL GNFIRSPCES LRPRTKPAVV  1380
ETIEVSAGKK GKRAKVVLFQ CDIDLCDMTF ETRAELNAHK RNICTDESCG KRFSSHKYLK  1440
RHQCVHSDKR PFKCPWDGCE MTFKWLWAQT EHVRVHTGER PYKCSAPSCG QTFRYVSDYS  1500
RHRKKFNHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-74144262376Transcription factor jumonji (Jmj) family protein
6ip4_A3e-74144262376Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113401346RRKHKRK
213411348RKHKRKKD
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G542600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985676.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLK4A4T20.0K4A4T2_SETIT; Uncharacterized protein
STRINGSi033886m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-180C2H2 family protein