PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G541600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 422aa MW: 44688.7 Da PI: 10.4686 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.2 | 5.1e-27 | 241 | 327 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Sevir.9G541600.2.p 241 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpenpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 327 689*******...*****999************************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.2E-45 | 235 | 333 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.0E-38 | 239 | 327 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.49E-20 | 242 | 328 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 6.0E-25 | 242 | 327 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 2.87E-20 | 332 | 412 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.92E-20 | 334 | 401 | No hit | No description |
SMART | SM01138 | 6.9E-12 | 334 | 421 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 8.4E-18 | 335 | 401 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MFSCVSSRLG RRRPAAPTGG LLARRPPSSR ETAKKPAATT KGRNAKQTAQ TKRKSEKIRV 60 PVSARSPDDF HLSLHFAPLL LLLLVALGFL QLCSPARSLP NSAPPIRARS PRVVMVSGVA 120 DNPDGGGGAP GAQLPPPPMG ARAALGTLPV SGGAAHSAST SGGSAGSPSS RSEQNAPDGA 180 GKGAAPGSAA AAVAASTPAS ETTFLRLNNL DINGDDAPSS QAPTSKKKKR GARAVGPDKG 240 NRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFTDPNNN IEAPDPENPN AQQYDEKNIR 300 RRVYDALNVL MAMDIISKDK KEIQWKGLPR TSISDIEDLK MELVGLKGRI EKKSAYLQEL 360 QDQYVGLQNL IQRNEQLYGS GNTPSGGVAL PFILVQVNKV TILCFAPFFI HNGEWTKWSG 420 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-35 | 233 | 332 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G541600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065957 | 0.0 | BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704658.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-104 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A368SVT8 | 0.0 | A0A368SVT8_SETIT; Uncharacterized protein | ||||
STRING | Si036124m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-102 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G541600.2.p |