PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G541600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 499aa    MW: 53319.1 Da    PI: 9.8906
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G541600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.86.7e-27241327371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Sevir.9G541600.1.p 241 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpenpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 327
                         689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-45235333IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.0E-38239327IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.98E-20242328IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.8E-25242327IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.39E-42332435IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-42334444No hitNo description
SMARTSM011381.0E-78334496IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-40335467IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MFSCVSSRLG RRRPAAPTGG LLARRPPSSR ETAKKPAATT KGRNAKQTAQ TKRKSEKIRV  60
PVSARSPDDF HLSLHFAPLL LLLLVALGFL QLCSPARSLP NSAPPIRARS PRVVMVSGVA  120
DNPDGGGGAP GAQLPPPPMG ARAALGTLPV SGGAAHSAST SGGSAGSPSS RSEQNAPDGA  180
GKGAAPGSAA AAVAASTPAS ETTFLRLNNL DINGDDAPSS QAPTSKKKKR GARAVGPDKG  240
NRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFTDPNNN IEAPDPENPN AQQYDEKNIR  300
RRVYDALNVL MAMDIISKDK KEIQWKGLPR TSISDIEDLK MELVGLKGRI EKKSAYLQEL  360
QDQYVGLQNL IQRNEQLYGS GNTPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS  420
TPFELHDDSY VLKEMRFCGR EQHDSAQEMI SNGGEGSSMS NIYWQQVQHP GRPNNGTVGL  480
PSSPPIPGIL KGRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-35233332193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G541600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0659570.0BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985668.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-138DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A368SVT80.0A0A368SVT8_SETIT; Uncharacterized protein
STRINGSi036124m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-135Transcription factor DP