PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G529800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 429aa    MW: 45681.2 Da    PI: 8.3161
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G529800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.7e-4098158262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  Sevir.9G529800.1.p  98 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 158
                         7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3194155IPR003851Zinc finger, Dof-type
PfamPF027012.7E-32100156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.929102156IPR003851Zinc finger, Dof-type
PROSITE patternPS013610104140IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAECRVGGGG GDGLIKLFGK TIPVPEAAAA VGEADKDIQQ SGSSTTELKG QENTLQDSTG  60
SPPQQEVADT EDSSATKKSS GDQQQGETAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY  120
NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAT SHFLQRVRAA LPIDALCAAA  180
KTNGTVLSFG SDMSSLDLTE QMKHLKEKLV PITRIKSSDD RSAGSCTEGS AKVEDSNQKE  240
KVTADKSANV VPHPGMNGVT MWPFSCAPPP ACYTSGIAIP FYPAAAAYWG CMVPGAWNTP  300
WPPHSQSESA SPLSTASPAS TKSNCFTPGK RSRDCDEEGD TKGHGKVWVP KTIRIDDADE  360
VARSSILSLI GINGDKASKD GRGCKLARVF EQQKEEAKTA THAVINSLPF LQGNPAALSR  420
SLTFQEGS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G529800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693750.0AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence.
GenBankHQ5400860.0HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985552.10.0cyclic dof factor 1
TrEMBLK4AAA50.0K4AAA5_SETIT; Uncharacterized protein
STRINGSi035812m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-60cycling DOF factor 2