PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G526200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 322aa    MW: 33564.6 Da    PI: 6.1741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G526200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-202978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  Sevir.9G526200.1.p 29 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 78
                        69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.81E-282888No hitNo description
PfamPF008477.1E-142978IPR001471AP2/ERF domain
PROSITE profilePS5103222.552986IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-302987IPR001471AP2/ERF domain
SMARTSM003801.5E-362992IPR001471AP2/ERF domain
PRINTSPR003673.2E-103041IPR001471AP2/ERF domain
PRINTSPR003673.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MESYGGGRKR AWKKGPTRGK GGPQNAACEY RGVRQRTWGK WVAEIREPNK RTRLWLGSFA  60
TAEEAALAYD EAARRLYGPD AFLNLPHLRA SVTAAAAAAH QRLRWLPASA RGGAAVPAYG  120
LLNLNAQHNV HVIHQRLQEL KNGGAPPAKP PCGGGARAPH QLVVPPLPAS TTSPCSTVTN  180
GGGVAAHAAL PPPMSCFQAL EEAVATAAMT ADDDTEPCEG ACAGTDKPQL DLREFLQQIG  240
VLKTDEDGAT AKEGLHGDGD VAGAFGFGGN GEFDWDALAA DLNDIAGGHG GAVGVNGGFQ  300
MDDLHEVDQF GSCLPIPVWD V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-163086663ATERF1
3gcc_A2e-163086663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G526200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284071e-166KJ728407.1 Zea mays clone pUT6712 AP2-EREBP transcription factor (EREB124) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985522.10.0dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-134DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A368SX520.0A0A368SX52_SETIT; Uncharacterized protein
STRINGPavir.Ia04341.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-47ERF family protein