PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G522000.9.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 690aa    MW: 78000.6 Da    PI: 7.6133
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G522000.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.52.4e-101241235
                GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                        +Rrgp+g +tLCnaCG+ ++k ++
  Sevir.9G522000.9.p  1 MRRGPEGRRTLCNACGIAWAKGKT 24
                        5********************986 PP
2FAR189.64.4e-2858143188
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         +fYn+YA +vGFsvrks+s ks   + + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k ++dgk+++++++ +HnH+
  Sevir.9G522000.9.p  58 EFYNKYAGHVGFSVRKSSSDKS-AGNITRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSDGKYRIAEFVADHNHQ 143
                         6********************9.5555899*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0065139IPR000679Zinc finger, GATA-type
PfamPF003204.4E-8124IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.8E-7125IPR013088Zinc finger, NHR/GATA-type
PfamPF031016.8E-2558143IPR004330FAR1 DNA binding domain
PfamPF105514.0E-25267361IPR018289MULE transposase domain
PfamPF044341.4E-4535579IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.854535582IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MRRGPEGRRT LCNACGIAWA KGKTRKVIDS DAHIDDATIA KVVPEVGMEF DNEDKAYEFY  60
NKYAGHVGFS VRKSSSDKSA GNITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR  120
MTIKITSDGK YRIAEFVADH NHQPAPPSTM HMLRSQRVLT ELQTTEVDSS EDSTTPSRFS  180
SGCLVRQAGA ATDVNFLPAD YRSSLHSKRM KNMQPGDAGA AVKYFQSMQM NNPSFFYAFQ  240
LDEDDKLTNI FWADSKSRTD FSYFGDVVCL DTTYKINSHG RPLMLFLGVN HHKQISIFGA  300
ALLYDESMES FNWLFDTFKV ATGGKQPKTV LSDQSMAAAA AITAAWPGTT HCHCPWQVYQ  360
NAVNHLNHIF QGSKTFAKDF SKCVYEYEEE EDFLLGWSTM LEDYNLRNNE WVRKLFQDRD  420
KWASVYNKHV FTADIKNSLQ SESISSVLKK YLSPQFDLSS FFKHFEKVLD EHRYAELQAD  480
FHASQSFPRI PPSKMLRQAA SMYTPVVFEI FRREFEMFVD SVIYSCGEAG TASDYRVAVT  540
DKPGEHYVKF ESSDFSVVCS CKKFESMGIQ CCHVLKVLDF RNIKELPQKY FLGRWKKDAK  600
SANTGNQEFL NDGSSQTPSS SLNGLGPFID HQHMQTNNQP NHPQDSSVSS FHQQGLHGDA  660
QGNQGYTPLV GMQPQEFIGD FHLNNGAGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G522000.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985482.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
RefseqXP_004985483.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A368SUZ80.0A0A368SUZ8_SETIT; Uncharacterized protein
STRINGTraes_4DL_C77385A0D.20.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-119FAR1-related sequence 5