PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G522000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 688aa MW: 77775.3 Da PI: 7.6133 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 31.5 | 2.4e-10 | 1 | 24 | 12 | 35 |
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 +Rrgp+g +tLCnaCG+ ++k ++ Sevir.9G522000.4.p 1 MRRGPEGRRTLCNACGIAWAKGKT 24 5********************986 PP | |||||||
2 | FAR1 | 89.6 | 4.3e-28 | 58 | 143 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +vGFsvrks+s ks + + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k ++dgk+++++++ +HnH+ Sevir.9G522000.4.p 58 EFYNKYAGHVGFSVRKSSSDKS-AGNITRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSDGKYRIAEFVADHNHQ 143 6********************9.5555899*************9999.999************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0065 | 1 | 39 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.4E-8 | 1 | 24 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.7E-7 | 1 | 25 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF03101 | 6.8E-25 | 58 | 143 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-25 | 267 | 361 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.4E-4 | 535 | 579 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.854 | 535 | 582 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.3E-4 | 557 | 584 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MRRGPEGRRT LCNACGIAWA KGKTRKVIDS DAHIDDATIA KVVPEVGMEF DNEDKAYEFY 60 NKYAGHVGFS VRKSSSDKSA GNITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR 120 MTIKITSDGK YRIAEFVADH NHQPAPPSTM HMLRSQRVLT ELQTTEVDSS EDSTTPSRFS 180 SGCLVRQAGA ATDVNFLPAD YRSSLHSKRM KNMQPGDAGA AVKYFQSMQM NNPSFFYAFQ 240 LDEDDKLTNI FWADSKSRTD FSYFGDVVCL DTTYKINSHG RPLMLFLGVN HHKQISIFGA 300 ALLYDESMES FNWLFDTFKV ATGGKQPKTV LSDQSMAAAA AITAAWPGTT HCHCPWQVYQ 360 NAVNHLNHIF QGSKTFAKDF SKCVYEYEEE EDFLLGWSTM LEDYNLRNNE WVRKLFQDRD 420 KWASVYNKHV FTADIKNSLQ SESISSVLKK YLSPQFDLSS FFKHFEKVLD EHRYAELQAD 480 FHASQSFPRI PPSKMLRQAA SMYTPVVFEI FRREFEMFVD SVIYSCGEAG TASDYRVAVT 540 DKPGEHYVKF ESSDFSVVCS CKKFESMGIQ CCHVLKVLDF RNIKELPQKY FLGRWKKDAK 600 SANTGNQEFL NDGSSQTPSS SLNGLGPFID HQHMQTNNQP NHDSSVSSFH QQGLHGDAQG 660 NQGYTPLVGM QPQEFIGDFH LNNGAGF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 110 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G522000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985481.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A368SUZ1 | 0.0 | A0A368SUZ1_SETIT; Uncharacterized protein | ||||
STRING | Traes_4DL_C77385A0D.2 | 0.0 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-119 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G522000.4.p |