PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G522000.12.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 641aa    MW: 72729.5 Da    PI: 7.2431
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G522000.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.73.9e-281196188
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
                         +fYn+YA +vGFsvrks+s ks   + + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k ++dgk+++++++ +HnH+
  Sevir.9G522000.12.p 11 EFYNKYAGHVGFSVRKSSSDKS-AGNITRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSDGKYRIAEFVADHNHQ 96
                         6********************9.5555899*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-251196IPR004330FAR1 DNA binding domain
PfamPF105513.5E-25220314IPR018289MULE transposase domain
PROSITE profilePS509669.854488535IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4488532IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4510537IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MEFDNEDKAY EFYNKYAGHV GFSVRKSSSD KSAGNITRSR TFVCSREGFR KDKKGAKEVK  60
RPRPETRIGC PARMTIKITS DGKYRIAEFV ADHNHQPAPP STMHMLRSQR VLTELQTTEV  120
DSSEDSTTPS RFSSGCLVRQ AGAATDVNFL PADYRSSLHS KRMKNMQPGD AGAAVKYFQS  180
MQMNNPSFFY AFQLDEDDKL TNIFWADSKS RTDFSYFGDV VCLDTTYKIN SHGRPLMLFL  240
GVNHHKQISI FGAALLYDES MESFNWLFDT FKVATGGKQP KTVLSDQSMA AAAAITAAWP  300
GTTHCHCPWQ VYQNAVNHLN HIFQGSKTFA KDFSKCVYEY EEEEDFLLGW STMLEDYNLR  360
NNEWVRKLFQ DRDKWASVYN KHVFTADIKN SLQSESISSV LKKYLSPQFD LSSFFKHFEK  420
VLDEHRYAEL QADFHASQSF PRIPPSKMLR QAASMYTPVV FEIFRREFEM FVDSVIYSCG  480
EAGTASDYRV AVTDKPGEHY VKFESSDFSV VCSCKKFESM GIQCCHVLKV LDFRNIKELP  540
QKYFLGRWKK DAKSANTGNQ EFLNDGSSQT PSSSLNGLGP FIDHQHMQTN NQPNHDSSVS  600
SFHQQGLHGD AQGNQGYTPL VGMQPQEFIG DFHLNNGAGF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G522000.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985481.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A368SUZ10.0A0A368SUZ1_SETIT; Uncharacterized protein
STRINGSb01g045140.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-118FAR1-related sequence 5