PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G522000.11.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 730aa    MW: 82166 Da    PI: 7.0663
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G522000.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA39.11.1e-122864135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k ++
  Sevir.9G522000.11.p 28 CLRCGISAsaTPHMRRGPEGRRTLCNACGIAWAKGKT 64
                         5567766666************************986 PP
2FAR189.54.7e-2898183188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fYn+YA +vGFsvrks+s ks   + + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k ++dgk+++++++ +HnH+
  Sevir.9G522000.11.p  98 EFYNKYAGHVGFSVRKSSSDKS-AGNITRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSDGKYRIAEFVADHNHQ 183
                          6********************9.5555899*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-92272No hitNo description
SMARTSM004015.3E-82279IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-112765IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-103064IPR000679Zinc finger, GATA-type
PfamPF031017.4E-2598183IPR004330FAR1 DNA binding domain
PfamPF105514.3E-25307401IPR018289MULE transposase domain
PROSITE profilePS509669.854575622IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4575619IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4597624IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MQFDDDRDFG AGGGSGEVDD KVDEPARCLR CGISASATPH MRRGPEGRRT LCNACGIAWA  60
KGKTRKVIDS DAHIDDATIA KVVPEVGMEF DNEDKAYEFY NKYAGHVGFS VRKSSSDKSA  120
GNITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR MTIKITSDGK YRIAEFVADH  180
NHQPAPPSTM HMLRSQRVLT ELQTTEVDSS EDSTTPSRFS SGCLVRQAGA ATDVNFLPAD  240
YRSSLHSKRM KNMQPGDAGA AVKYFQSMQM NNPSFFYAFQ LDEDDKLTNI FWADSKSRTD  300
FSYFGDVVCL DTTYKINSHG RPLMLFLGVN HHKQISIFGA ALLYDESMES FNWLFDTFKV  360
ATGGKQPKTV LSDQSMAAAA AITAAWPGTT HCHCPWQVYQ NAVNHLNHIF QGSKTFAKDF  420
SKCVYEYEEE EDFLLGWSTM LEDYNLRNNE WVRKLFQDRD KWASVYNKHV FTADIKNSLQ  480
SESISSVLKK YLSPQFDLSS FFKHFEKVLD EHRYAELQAD FHASQSFPRI PPSKMLRQAA  540
SMYTPVVFEI FRREFEMFVD SVIYSCGEAG TASDYRVAVT DKPGEHYVKF ESSDFSVVCS  600
CKKFESMGIQ CCHVLKVLDF RNIKELPQKY FLGRWKKDAK SANTGNQEFL NDGSSQTPSS  660
SLNGLGPFID HQHMQTNNQP NHPQDSSVSS FHQQGLHGDA QGNQGYTPLV GMQPQEFIGD  720
FHLNNGAGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G522000.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985480.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A368SV120.0A0A368SV12_SETIT; Uncharacterized protein
STRINGORGLA03G0057700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-118FAR1-related sequence 5