PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G521100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 35143.8 Da PI: 6.0927 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f+tae+Aa+a++ +++l+g Sevir.9G521100.1.p 99 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTAEDAARAYDVEARRLRG 148 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-32 | 98 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-36 | 99 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 99 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-22 | 99 | 157 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-11 | 99 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-29 | 99 | 158 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MCGGAILTEL IPSPRRAASK PVTAGHLWSA GSNSKKAGNG SDKGHHHADI DDFEAAFEDF 60 DDEFDEEVED HHFVFSAKSA FSPAHGGRAA SQKKRGRRHF RGIRQRPWGK WAAEIRDPHK 120 GTRVWLGTFD TAEDAARAYD VEARRLRGSK AKVNFPAAGA RPRRRGNPRA APKPQHHHAA 180 AAEQPALLAG EKKQEEIAVK PEITVSFDVD GFFNMTFPAF PAAPLAMESS FTGSTEPESG 240 SPAKKPRYDN ESSGGMSSGG GSTLELADEL AFDPFTLLQL PYSGGYESLD GLFAVDAAQD 300 VNGVNNGMDG VSLWSFDDFP ADSAVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 98 | 156 | 4 | 63 | ATERF1 |
3gcc_A | 2e-22 | 98 | 156 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 97 | QKKRGRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G521100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039300 | 1e-125 | BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds. | |||
GenBank | EU970244 | 1e-125 | EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds. | |||
GenBank | KJ726938 | 1e-125 | KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985469.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_004985470.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_004985471.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | K4ACK8 | 0.0 | K4ACK8_SETIT; Uncharacterized protein | ||||
STRING | Si036606m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 8e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G521100.1.p |