PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G521000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 300aa    MW: 31376.4 Da    PI: 4.3549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G521000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1773123155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GVr+++  g+W+Ae+rdp+    +  r++lg+f tae Aa+a++ a++ l+g
  Sevir.9G521000.1.p  73 SQYHGVRRRP-LGKWAAEVRDPV----KgVRVWLGTFATAEAAARAYDDAARDLRG 123
                         78********.8*********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.61E-1473133No hitNo description
SuperFamilySSF541711.5E-2073133IPR016177DNA-binding domain
PROSITE profilePS5103222.52474131IPR001471AP2/ERF domain
PfamPF008474.8E-1174123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2974133IPR001471AP2/ERF domain
SMARTSM003802.9E-3174137IPR001471AP2/ERF domain
PRINTSPR003671.7E-87586IPR001471AP2/ERF domain
PRINTSPR003671.7E-897113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCGGAILAEL IPSATAGGKG RKRAPAAAAK DDDFEAAFRE FDEDSDEEVV LVTERKAFAF  60
GAAAGARRSR RPSQYHGVRR RPLGKWAAEV RDPVKGVRVW LGTFATAEAA ARAYDDAARD  120
LRGAGAKLNF PTSSSATART SKRSAAGAAK AVPYVDLVDG DDVPDAAHAP SVKSEAETSD  180
SVSDASGCST LPDFSWQGMS ATDDGATWPA AGFHVELGRP SKRAGTEPQE PEEEEMAPPP  240
AASEESADML LDAFMFGDQF SFFNGGAYES LDGLFGGDAS LSLGNEGVGL WSFDDTVCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17741311472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G521000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685512e-47BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557152e-47EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankEU9559812e-47EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankKJ7276122e-47KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985468.10.0ethylene-responsive transcription factor ERF073
TrEMBLK4AD640.0K4AD64_SETIT; Uncharacterized protein
STRINGSi036821m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-15ERF family protein