PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G513700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 299aa    MW: 31668.5 Da    PI: 7.637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G513700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20115164255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  Sevir.9G513700.1.p 115 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 164
                         59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-32114174No hitNo description
Gene3DG3DSA:3.30.730.106.2E-33115173IPR001471AP2/ERF domain
PROSITE profilePS5103223.604115172IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23115173IPR016177DNA-binding domain
SMARTSM003801.8E-38115178IPR001471AP2/ERF domain
PRINTSPR003672.6E-11116127IPR001471AP2/ERF domain
PfamPF008471.4E-14116164IPR001471AP2/ERF domain
PRINTSPR003672.6E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATTIDWHGR NAALYEMAAD SKELVRALAA APPMQQAPTI SFAYPCSSGA ERQGAAGSLL  60
GGGGLTLAQV LQVQSQLQFL RRPAGGALAA VATHPMKRPG VVKAPAPVPR PVSKLYRGVR  120
QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE AALAYDSAAF RLRGDSARLN FPELRRGGAH  180
LGPPLHAAVD AKLHAICNGT DVAPPQNQSQ SQRNATAATA ATTPSTFSSA SPDVKSEPGC  240
SGSESSSSAD GDVSSTGSSD VVPEMQLLDF SEAPWDESES FHLRKYPSLE IDWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20114172463ATERF1
3gcc_A2e-20114172463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G513700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985387.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLK4AD700.0K4AD70_SETIT; Uncharacterized protein
STRINGSi036827m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-41related to AP2 4