PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G504700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 245aa    MW: 26191.1 Da    PI: 8.7514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G504700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1795145356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +g+++AeIrd + +g   r++lg+f++ae Aa a+++a+ +++g+
  Sevir.9G504700.1.p  95 YRGVRKRP-WGKFAAEIRDSTRDG--VRVWLGTFDSAEAAALAYDQAAFAMRGA 145
                         9*******.**********43354..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3594158IPR001471AP2/ERF domain
PROSITE profilePS5103222.97294152IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2294154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2994153IPR001471AP2/ERF domain
PfamPF008471.7E-1295144IPR001471AP2/ERF domain
PRINTSPR003673.9E-1095106IPR001471AP2/ERF domain
CDDcd000186.45E-1495129No hitNo description
PRINTSPR003673.9E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVSSGTQNSE RSPALHLSTG IVGFLARRAM STHTQRSSQQ PGVPLDSPGS STGSVESPPP  60
WSSVQQHPAP PFDSNDTEEM VQADMAKHAA AGHAYRGVRK RPWGKFAAEI RDSTRDGVRV  120
WLGTFDSAEA AALAYDQAAF AMRGAAAVLN FPVERVRESL EGMGVDASCG GSPVVALKRR  180
HSMRARRRPG TGSRRGKAAG RSEVMELEDL GTEYLEALLG ATTEEQRENS SSSTSSWCRS  240
HHSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2690153164ATERF1
3gcc_A1e-2690153164ATERF1
5wx9_A2e-26951541574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G504700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699803e-79BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985293.11e-176ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y99e-52ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A368SUC31e-175A0A368SUC3_SETIT; Uncharacterized protein
TrEMBLK4AJ471e-175K4AJ47_SETIT; Uncharacterized protein
STRINGSi038911m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-38ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]