PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G491400.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 643aa    MW: 71945.6 Da    PI: 4.6232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G491400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.34.1e-1277754128
                 NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         + +  yfF++r+++y+++  +n +     Wk+ g +++++  +g+l g+k+++v+y+   +++++++tdW +h++++
  Sevir.9G491400.4.p   7 DGRPSYFFHRRSESYNNEGDENNS-----WKKIGASRSIIL-DGTLQGCKEVFVLYEDmmSDKSPQETDWRLHQFHI 77 
                         55678**********998887775.....************.999***********6434888999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.85195IPR003441NAC domain
SuperFamilySSF1019411.57E-14695IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MPGVRHDGRP SYFFHRRSES YNNEGDENNS WKKIGASRSI ILDGTLQGCK EVFVLYEDMM  60
SDKSPQETDW RLHQFHIRNT VKDEGEVVVS KIFFESRNNP SELAGITPIE AKQDVSTPDD  120
SREECTACFN PGICTETDEL DHISLKERYR ILLADKSSCP DTASARKSVM GVEASRTSSK  180
RNNEGTACKE DICSMLQEIS SAPPIIESNP MDDNNSRLLG ENDPGFSSIS VTSSRTDPSL  240
CEAGCPCDPL EGSENQVGGS ATCGSEHSEL VVRKQCLLVA DVKLEPALED YEIGPSESPR  300
ENSTHAKGSV PSLGVKDELN ESELPGICEK ISFSFRQCRK RKASYSTEKT LEEDAYTNDE  360
GGSYCSRRRR KKTATDSIET ALDEDAPGLL QILLNRGISV EEIKLYGAEE DSDMLPDSTE  420
SSFEDLENVI ANIFPKRASL LKLSVARHEK GEKAIYCLSC LISLIEQSRY LQFRDCPVEW  480
GWCRDLQSFI FVFRSHNRIV LERPEYGYAT YFFEVVQSLP IEWQIRRLVI AMKLSGCGRT  540
ALIENRPLMV GEDLSEGEAD VLQQYGWIRN TGLGTMVNYR DRVVHDRWME RSVVDWKAKI  600
GKLLMSGYAE GQSITIHGPK NVADLLEATG DAEVDIKLED PF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G491400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704609.10.0uncharacterized protein LOC101783536
TrEMBLK4A6X80.0K4A6X8_SETIT; Uncharacterized protein
STRINGSi034633m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.14e-18NAC domain containing protein 99