PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G491400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 635aa MW: 71065.3 Da PI: 4.7702 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.3 | 3.1e-19 | 10 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd.......iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 lp+G++F+P+d++l+ +L++++ + ++e+ik+vd + ++P+d+p v+++ + yfF++r+++y+++ +n + Sevir.9G491400.3.p 10 LPRGVEFNPSDSDLL-WHLAAEAGNGLaerhPFINEFIKSVDdgrgfsyTHPTHPRDMP-GVRHDGRPSYFFHRRSESYNNEGDENNS--- 95 699************.5676665544435533344569999778887666778999999.667788999**********998887775... PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 Wk+ g +++++ +g+l g+k+++v+y+ +++++++tdW +h++++ Sevir.9G491400.3.p 96 --WKKIGASRSIIL-DGTLQGCKEVFVLYEDmmSDKSPQETDWRLHQFHI 142 ..************.999***********6434888999*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-24 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.909 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-8 | 11 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 635 aa Download sequence Send to blast |
MSTHQSWPGL PRGVEFNPSD SDLLWHLAAE AGNGLAERHP FINEFIKSVD DGRGFSYTHP 60 THPRDMPGVR HDGRPSYFFH RRSESYNNEG DENNSWKKIG ASRSIILDGT LQGCKEVFVL 120 YEDMMSDKSP QETDWRLHQF HIRNTVKDEG EVVVSKIFFE SRNNPSELAG ITPIEAKQDV 180 STPDDSREEC TACFNPGICT ETDELDHISL KERYRILLAD KSSCPDTASA RKSVMGVEAS 240 RTSSKRNNEG TACKEDICSM LQEISSAPPI IESNPMDDNN SRLLGENDPG FSSISVTSSR 300 TDPSLCEAGC PCDPLEGSEN QVGGSATCGS EHSELVVRKQ CLLVADVKLE PALEDYEIGP 360 SESPRENSTH AKGSVPSLGV KDELNESELP GICEKISFSF RQCRKRKASY STEKTLEEDA 420 YTNDEGGSYC SRRRRKKTAT DSIETALDED APGLLQILLN RGISVEEIKL YGAEEDSDML 480 PDSTESSFED LENVIANIFP KRASLLKLSV ARHEKGEKAI YCLSCLISLI EQSRYLQFRD 540 CPVEWGWCRD LQSFIFVFRS HNRIVLERPE YGYATYFFEV VQSLPIEWQI RRLVIAMKLS 600 GCGRTALIEN RPLMVGEDLS EGGWREASLI GRRR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G491400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704609.1 | 0.0 | uncharacterized protein LOC101783536 | ||||
TrEMBL | K4A6X8 | 0.0 | K4A6X8_SETIT; Uncharacterized protein | ||||
STRING | Si034633m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 7e-37 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G491400.3.p |