PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G491400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 675aa    MW: 75204 Da    PI: 4.6601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G491400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.41.3e-1010110197
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd.......iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                         lp+G++F+P+d++l+  +L++++ +        ++e+ik+vd        + ++P+d+p  v+++ +  yfF++r+++y+++  +n +   
  Sevir.9G491400.2.p  10 LPRGVEFNPSDSDLL-WHLAAEAGNGLaerhPFINEFIKSVDdgrgfsyTHPTHPRDMP-GVRHDGRPSYFFHRRSESYNNEGDENNS--- 95 
                         699************.5676665544435533344569999778887666778999999.667788999**********998887775... PP

                 NAM  81 gyWkatgkdkevlskkg 97 
                           Wk+ g +++++  ++
  Sevir.9G491400.2.p  96 --WKKIGASRSIILDGT 110
                         ..*********998533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-133111IPR003441NAC domain
PROSITE profilePS5100510.07210162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MSTHQSWPGL PRGVEFNPSD SDLLWHLAAE AGNGLAERHP FINEFIKSVD DGRGFSYTHP  60
THPRDMPGVR HDGRPSYFFH RRSESYNNEG DENNSWKKIG ASRSIILDGT LQVKDEGEVV  120
VSKIFFESRN NPSELAGITP IEAKQDVSTP DDSREECTAC FNPGICTETD ELDHISLKER  180
YRILLADKSS CPDTASARKS VMGVEASRTS SKRNNEGTAC KEDICSMLQE ISSAPPIIES  240
NPMDDNNSRL LGENDPGFSS ISVTSSRTDP SLCEAGCPCD PLEGSENQVG GSATCGSEHS  300
ELVVRKQCLL VADVKLEPAL EDYEIGPSES PRENSTHAKG SVPSLGVKDE LNESELPGIC  360
EKISFSFRQC RKRKASYSTE KTLEEDAYTN DEGGSYCSRR RRKKTATDSI ETALDEDAPG  420
LLQILLNRGI SVEEIKLYGA EEDSDMLPDS TESSFEDLEN VIANIFPKRA SLLKLSVARH  480
EKGEKAIYCL SCLISLIEQS RYLQFRDCPV EWGWCRDLQS FIFVFRSHNR IVLERPEYGY  540
ATYFFEVVQS LPIEWQIRRL VIAMKLSGCG RTALIENRPL MVGEDLSEGE ADVLQQYGWI  600
RNTGLGTMVN YRDRVVHDRW MERSVVDWKA KIGKLLMSGY AEGQSITIHG PKNVADLLEA  660
TGDAEVDIKL EDPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G491400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704609.10.0uncharacterized protein LOC101783536
TrEMBLK4A6X80.0K4A6X8_SETIT; Uncharacterized protein
STRINGSi034633m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-25NAC family protein