PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G491400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 708aa    MW: 79227.5 Da    PI: 4.686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G491400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM613.8e-19101421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd.......iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                         lp+G++F+P+d++l+  +L++++ +        ++e+ik+vd        + ++P+d+p  v+++ +  yfF++r+++y+++  +n +   
  Sevir.9G491400.1.p  10 LPRGVEFNPSDSDLL-WHLAAEAGNGLaerhPFINEFIKSVDdgrgfsyTHPTHPRDMP-GVRHDGRPSYFFHRRSESYNNEGDENNS--- 95 
                         699************.5676665544435533344569999778887666778999999.667788999**********998887775... PP

                 NAM  81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                           Wk+ g +++++  +g+l g+k+++v+y+   +++++++tdW +h++++
  Sevir.9G491400.1.p  96 --WKKIGASRSIIL-DGTLQGCKEVFVLYEDmmSDKSPQETDWRLHQFHI 142
                         ..************.999***********6434888999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-243160IPR003441NAC domain
PROSITE profilePS5100522.90910160IPR003441NAC domain
PfamPF023651.5E-811142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MSTHQSWPGL PRGVEFNPSD SDLLWHLAAE AGNGLAERHP FINEFIKSVD DGRGFSYTHP  60
THPRDMPGVR HDGRPSYFFH RRSESYNNEG DENNSWKKIG ASRSIILDGT LQGCKEVFVL  120
YEDMMSDKSP QETDWRLHQF HIRNTVKDEG EVVVSKIFFE SRNNPSELAG ITPIEAKQDV  180
STPDDSREEC TACFNPGICT ETDELDHISL KERYRILLAD KSSCPDTASA RKSVMGVEAS  240
RTSSKRNNEG TACKEDICSM LQEISSAPPI IESNPMDDNN SRLLGENDPG FSSISVTSSR  300
TDPSLCEAGC PCDPLEGSEN QVGGSATCGS EHSELVVRKQ CLLVADVKLE PALEDYEIGP  360
SESPRENSTH AKGSVPSLGV KDELNESELP GICEKISFSF RQCRKRKASY STEKTLEEDA  420
YTNDEGGSYC SRRRRKKTAT DSIETALDED APGLLQILLN RGISVEEIKL YGAEEDSDML  480
PDSTESSFED LENVIANIFP KRASLLKLSV ARHEKGEKAI YCLSCLISLI EQSRYLQFRD  540
CPVEWGWCRD LQSFIFVFRS HNRIVLERPE YGYATYFFEV VQSLPIEWQI RRLVIAMKLS  600
GCGRTALIEN RPLMVGEDLS EGEADVLQQY GWIRNTGLGT MVNYRDRVVH DRWMERSVVD  660
WKAKIGKLLM SGYAEGQSIT IHGPKNVADL LEATGDAEVD IKLEDPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G491400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704609.10.0uncharacterized protein LOC101783536
TrEMBLK4A6X80.0K4A6X8_SETIT; Uncharacterized protein
STRINGSi034633m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-36NAC family protein