PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G489200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 690aa MW: 74011.1 Da PI: 6.863 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.9 | 2.2e-28 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Sevir.9G489200.2.p 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.6 | 4.5e-26 | 18 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++ +D+i+ D+ mp+mdG++ll++ e +lp+i+++a + + + + Sevir.9G489200.2.p 18 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLEHVGLEM-DLPVIMMSADSRTDIVMKG 106 89*********************.***************99999***********************6644.8****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 +k Ga d+l Kp+ +eel + Sevir.9G489200.2.p 107 IKHGACDYLIKPVRMEELKN 126 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.7E-182 | 1 | 672 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-42 | 15 | 151 | No hit | No description |
SuperFamily | SSF52172 | 1.57E-36 | 15 | 140 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.8E-30 | 16 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.037 | 17 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.7E-23 | 18 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.08E-27 | 19 | 131 | No hit | No description |
SuperFamily | SSF46689 | 9.14E-20 | 199 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 199 | 260 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.674 | 199 | 258 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.1E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-7 | 204 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MAAAAEARGA DFPVGMKVLV VDDDPTCLVV LKRMLLECRY DVTTCPQATR ALTMLRENRR 60 GFDVIISDVH MPDMDGFRLL EHVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR 120 MEELKNIWQH VVRKKFNENK DHEHSGSLDD TDRNRATNND NEYASSANDG GDGSWKSQKK 180 KREKEEDEAD MENGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG 240 LTRENVASHL QKFRLYLKRI AQHHAGIPHP FVAPASSAKV APLGGLEFQA LAASGQIPPQ 300 ALAALQDELL GRPTSSLALP GRDQSSLRLA AIKGNKPHGE REIAFGQPIY KSQSNAYGAF 360 SQSSPAVGGL PSFAAWPNNK LGMADSPSAL GNVSNPQNSN LLLHELQQQP DTLLPGTLHN 420 IDVKPSGIVM PSQSLNAFPA SEGISPNQNP LVIASQSPSF LASIPPSMKH EPLLASSSPS 480 NSLLGGIDMV NQASTSQPLI STHGANLPGL MNRSSNAMPS PAISNFQSGN NRYMVNQNAM 540 GVSSRTPDVL KTESTDSLSR SYGYIGGGTS VDSGLLSSQI KNPQYGLLQS PNDGTGSWSP 600 SQDIDSYGNT LGQGHPGSSS SNFQSSNVAL GKLPDQGRGR NHGFVGKGNC IPSRFAVDEV 660 ESPTNNLSHS IGSSRDIVNP DIFGFSGQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-24 | 198 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G489200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB060130 | 0.0 | AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds. | |||
GenBank | EU975545 | 0.0 | EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985153.1 | 0.0 | two-component response regulator ORR21 | ||||
Refseq | XP_022678877.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | A2XE31 | 0.0 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
TrEMBL | K4A6L2 | 0.0 | K4A6L2_SETIT; Two-component response regulator | ||||
STRING | Si034517m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-116 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G489200.2.p |