PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G477500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 747aa    MW: 82802.6 Da    PI: 5.9867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G477500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-095193347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  Sevir.9G477500.2.p 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93
                        6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-104497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1674798IPR017884SANT domain
SMARTSM007175.1E-74896IPR001005SANT/Myb domain
CDDcd001678.70E-75194No hitNo description
PfamPF002499.2E-75193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MEKEVHEELN PLLQTIEFAP STSDPNQKLD SAQPSDPNQK PAKKPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML  120
RWWSLLEKFS CSASKLHLKP RRFKTFVEAL GNQLLKDRNK SRRKCPRVDM CVSSPSPIVG  180
KTPGNEAFPL KFLPVDAQNG SRVASPKGAF FKRMAETNSS KSGATKGDLS ATRTVKQKRR  240
AAMAGVSLVA DAAEELERNT INPGMLCNVD ARTLTSSSDK LSTVDGISTN HMKEADSQAP  300
AKLKLQLFPI NEATRKALEK DEHNPHLELT LSSRKKISSV LEHLNRKWGN SNIASGELIL  360
FPYCAHQEDL ATYQRWTTRD TVAVADVFLS VNSPSVFRLR YGWFSLVELE AGVSEISLTH  420
FENCMMPEDI QVKSPSGDKS CVQKDDALLS SNIHEQYPCS SIDQSALLHI TPSSTGKITE  480
LPEQTPSQFG SQKQVRVPVT QAFEDDQGMN CAAISEGEWA DTLTDISVGY LLTEASKGTH  540
LDCIGTSSVK NALLLENPCS YDSFDAAVAL HVSRFQASEQ PAHTPHSTIW GGEETCDEFS  600
FNLSASRKQE GSNTPSSSSP DTDNEVHPLN SEGFQGFLQD LTGGEAAADN PCNDDGKDRE  660
EFCAKSPPRN DDTNDLKDQS LADIYWPDSL GPLDLDIPSS RYQADDLIIG DSQNSWNRMM  720
ANSLDAFRNL SFFSSVDKND SIPSIM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G477500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284240.0KJ728424.1 Zea mays clone pUT6729 MYB-related transcription factor (MYBR54) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985049.10.0TSL-kinase interacting protein 1
TrEMBLK4A6590.0K4A659_SETIT; Uncharacterized protein
STRINGSi034363m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.11e-173TSL-kinase interacting protein 1