PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G473800.8.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-other

Protein Properties

Length: 1160aa MW: 130013 Da PI: 6.7697

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G473800.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.9	9.4e-15	15	67	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ +e+e+ A+ +gLt +qV++WF+ rR ke++ Sevir.9G473800.8.p 15 TKKSPQQIQMLEKFYSDVQYPKPDEMEQYATCVGLTYSQVRIWFKERRRKERR 67 66799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.981	8	68	IPR001356	Homeobox domain
SMART	SM00389	3.0E-15	10	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-14	11	72	IPR009057	Homeodomain-like
Pfam	PF00046	5.1E-12	15	67	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.5E-15	15	73	IPR009057	Homeodomain-like
CDD	cd00086	5.45E-9	15	58	No hit	No description
SMART	SM00571	1.4E-5	377	436	IPR018501	DDT domain
PROSITE profile	PS50827	10.411	377	436	IPR018501	DDT domain
Pfam	PF02791	2.1E-8	379	431	IPR018501	DDT domain
Pfam	PF15612	2.6E-5	659	687	IPR028942	WHIM1 domain
Pfam	PF15613	2.9E-11	779	850	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1160 aa Download sequence Send to blast
MVTNGLGAKR ENAGTKKSPQ QIQMLEKFYS DVQYPKPDEM EQYATCVGLT YSQVRIWFKE 60 RRRKERREME TIGSHMERQL SGRSSGPRTS SSSSSCNEAP MYGISCSRPE FDSSTSVVGE 120 ENTVQSQVLF PKDYILRKIF RKDGPPLGSE FDPLPKSERD RIRDTTCHHS SQNQRAVKKR 180 KIIESTSQRS SVPYEDTVPV RKHGIGKGLM TVWHAMYSQS HNVECQSGPN FIDETGCLRS 240 LRPFDDRDGL EDNGKTTQNQ SMAQKKVDKR SKPPLNKRKV PCKRVTGPKE HPPMDCHLSI 300 NKSESSELLT EQVTLVDDEE LELSELQAGP NPLRCSAHLS SSGRHGCPLC KDLLAKFPPQ 360 SVKMKQPFSA KPWDSSPEMV KKLFQVIRFV YTHFGTIDVH PFTFDEFAQA FHDKDSLLLG 420 EVHIGLLKLL LLNAEMGSDG VFVPRSSKDC RFLSFLNFVR EQEFDVNFWI RSLNSLTWVE 480 ILRQVLVASG FGSKQHMLNR DFFNKEKNQM VKYGLRPRTL KGELFALLSK AGSGGLKVSV 540 LAKSSEIVDL NVSGTLELEQ LICLTLSSDI TLFEKIAPSA YRLRVDPQIK GKEDARSDSE 600 DSGSVDDDED ASSSDDESNG SQKMNLPEHG DRIARKKEQK NAHGSPNKCS EIDESYPGER 660 WLLGLMEGEY SDLSIDEKLD CLVALIDIAS GAGSVPRLEE PQRVLHNMPR AQPHQSGGKI 720 KKSTKNLYRS SDESLNGPGN SYSLDCSRQG RSASRRNQDY IMDSERNDLS GVAHEPQVVL 780 LGSDRRYNSY WLFLGPCRAD DPGHRRVYFE SSEDGHWEVV DSPQELLSLL SVLDSRGTRE 840 AHLLASMEKR QACLFEAMKK HVEGGNAIGL PASSDSFRSE TSTGDGASPK TSSVSGASPV 900 SDVENASVPP DLEDSNLDSS SAIVIENGKR GDERILMWDR LQAFDKWIWT SFYSVLTTVK 960 CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVGFDL EEKYAVHAAT CREPEDAHEV 1020 PNHKVLPSQL QALKAAIHAI EASMPEVAFT GSWMKSAHKL WVKRLRRTSS LPELLQVLVD 1080 FVGAMDEDWL YKSSSSVSFS SYLDDIIVYF QTMPQTTSAV ALWVVKLDAL IAPYLDKPDT 1140 SRALAMKELA QARSQASAR*

Sequence ? help Back to Top

Protein Sequence Length: 1160 aa Download sequence Send to blast

MVTNGLGAKR ENAGTKKSPQ QIQMLEKFYS DVQYPKPDEM EQYATCVGLT YSQVRIWFKE  60
RRRKERREME TIGSHMERQL SGRSSGPRTS SSSSSCNEAP MYGISCSRPE FDSSTSVVGE  120
ENTVQSQVLF PKDYILRKIF RKDGPPLGSE FDPLPKSERD RIRDTTCHHS SQNQRAVKKR  180
KIIESTSQRS SVPYEDTVPV RKHGIGKGLM TVWHAMYSQS HNVECQSGPN FIDETGCLRS  240
LRPFDDRDGL EDNGKTTQNQ SMAQKKVDKR SKPPLNKRKV PCKRVTGPKE HPPMDCHLSI  300
NKSESSELLT EQVTLVDDEE LELSELQAGP NPLRCSAHLS SSGRHGCPLC KDLLAKFPPQ  360
SVKMKQPFSA KPWDSSPEMV KKLFQVIRFV YTHFGTIDVH PFTFDEFAQA FHDKDSLLLG  420
EVHIGLLKLL LLNAEMGSDG VFVPRSSKDC RFLSFLNFVR EQEFDVNFWI RSLNSLTWVE  480
ILRQVLVASG FGSKQHMLNR DFFNKEKNQM VKYGLRPRTL KGELFALLSK AGSGGLKVSV  540
LAKSSEIVDL NVSGTLELEQ LICLTLSSDI TLFEKIAPSA YRLRVDPQIK GKEDARSDSE  600
DSGSVDDDED ASSSDDESNG SQKMNLPEHG DRIARKKEQK NAHGSPNKCS EIDESYPGER  660
WLLGLMEGEY SDLSIDEKLD CLVALIDIAS GAGSVPRLEE PQRVLHNMPR AQPHQSGGKI  720
KKSTKNLYRS SDESLNGPGN SYSLDCSRQG RSASRRNQDY IMDSERNDLS GVAHEPQVVL  780
LGSDRRYNSY WLFLGPCRAD DPGHRRVYFE SSEDGHWEVV DSPQELLSLL SVLDSRGTRE  840
AHLLASMEKR QACLFEAMKK HVEGGNAIGL PASSDSFRSE TSTGDGASPK TSSVSGASPV  900
SDVENASVPP DLEDSNLDSS SAIVIENGKR GDERILMWDR LQAFDKWIWT SFYSVLTTVK  960
CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVGFDL EEKYAVHAAT CREPEDAHEV  1020
PNHKVLPSQL QALKAAIHAI EASMPEVAFT GSWMKSAHKL WVKRLRRTSS LPELLQVLVD  1080
FVGAMDEDWL YKSSSSVSFS SYLDDIIVYF QTMPQTTSAV ALWVVKLDAL IAPYLDKPDT  1140
SRALAMKELA QARSQASAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	67	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G473800.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661208.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A368STC4	0.0	A0A368STC4_SETIT; Uncharacterized protein
STRING	Si033977m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sevir.9G473800.8.p