PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G473800.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-other

Protein Properties

Length: 1165aa MW: 130537 Da PI: 6.7697

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G473800.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.9	9.4e-15	20	72	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ +e+e+ A+ +gLt +qV++WF+ rR ke++ Sevir.9G473800.4.p 20 TKKSPQQIQMLEKFYSDVQYPKPDEMEQYATCVGLTYSQVRIWFKERRRKERR 72 66799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.981	13	73	IPR001356	Homeobox domain
SMART	SM00389	3.0E-15	15	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-14	16	77	IPR009057	Homeodomain-like
Pfam	PF00046	5.1E-12	20	72	IPR001356	Homeobox domain
CDD	cd00086	5.48E-9	20	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-15	20	78	IPR009057	Homeodomain-like
PROSITE profile	PS50827	10.411	382	441	IPR018501	DDT domain
SMART	SM00571	1.4E-5	382	441	IPR018501	DDT domain
Pfam	PF02791	2.1E-8	384	436	IPR018501	DDT domain
Pfam	PF15612	2.6E-5	664	692	IPR028942	WHIM1 domain
Pfam	PF15613	2.9E-11	784	855	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1165 aa Download sequence Send to blast
MPPAQMVTNG LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPDEMEQYAT CVGLTYSQVR 60 IWFKERRRKE RREMETIGSH MERQLSGRSS GPRTSSSSSS CNEAPMYGIS CSRPEFDSST 120 SVVGEENTVQ SQVLFPKDYI LRKIFRKDGP PLGSEFDPLP KSERDRIRDT TCHHSSQNQR 180 AVKKRKIIES TSQRSSVPYE DTVPVRKHGI GKGLMTVWHA MYSQSHNVEC QSGPNFIDET 240 GCLRSLRPFD DRDGLEDNGK TTQNQSMAQK KVDKRSKPPL NKRKVPCKRV TGPKEHPPMD 300 CHLSINKSES SELLTEQVTL VDDEELELSE LQAGPNPLRC SAHLSSSGRH GCPLCKDLLA 360 KFPPQSVKMK QPFSAKPWDS SPEMVKKLFQ VIRFVYTHFG TIDVHPFTFD EFAQAFHDKD 420 SLLLGEVHIG LLKLLLLNAE MGSDGVFVPR SSKDCRFLSF LNFVREQEFD VNFWIRSLNS 480 LTWVEILRQV LVASGFGSKQ HMLNRDFFNK EKNQMVKYGL RPRTLKGELF ALLSKAGSGG 540 LKVSVLAKSS EIVDLNVSGT LELEQLICLT LSSDITLFEK IAPSAYRLRV DPQIKGKEDA 600 RSDSEDSGSV DDDEDASSSD DESNGSQKMN LPEHGDRIAR KKEQKNAHGS PNKCSEIDES 660 YPGERWLLGL MEGEYSDLSI DEKLDCLVAL IDIASGAGSV PRLEEPQRVL HNMPRAQPHQ 720 SGGKIKKSTK NLYRSSDESL NGPGNSYSLD CSRQGRSASR RNQDYIMDSE RNDLSGVAHE 780 PQVVLLGSDR RYNSYWLFLG PCRADDPGHR RVYFESSEDG HWEVVDSPQE LLSLLSVLDS 840 RGTREAHLLA SMEKRQACLF EAMKKHVEGG NAIGLPASSD SFRSETSTGD GASPKTSSVS 900 GASPVSDVEN ASVPPDLEDS NLDSSSAIVI ENGKRGDERI LMWDRLQAFD KWIWTSFYSV 960 LTTVKCGKKS FKESLVRCES CHDLYWRDEK HCRICHSTFE VGFDLEEKYA VHAATCREPE 1020 DAHEVPNHKV LPSQLQALKA AIHAIEASMP EVAFTGSWMK SAHKLWVKRL RRTSSLPELL 1080 QVLVDFVGAM DEDWLYKSSS SVSFSSYLDD IIVYFQTMPQ TTSAVALWVV KLDALIAPYL 1140 DKPDTSRALA MKELAQARSQ ASAR*

Sequence ? help Back to Top

Protein Sequence Length: 1165 aa Download sequence Send to blast

MPPAQMVTNG LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPDEMEQYAT CVGLTYSQVR  60
IWFKERRRKE RREMETIGSH MERQLSGRSS GPRTSSSSSS CNEAPMYGIS CSRPEFDSST  120
SVVGEENTVQ SQVLFPKDYI LRKIFRKDGP PLGSEFDPLP KSERDRIRDT TCHHSSQNQR  180
AVKKRKIIES TSQRSSVPYE DTVPVRKHGI GKGLMTVWHA MYSQSHNVEC QSGPNFIDET  240
GCLRSLRPFD DRDGLEDNGK TTQNQSMAQK KVDKRSKPPL NKRKVPCKRV TGPKEHPPMD  300
CHLSINKSES SELLTEQVTL VDDEELELSE LQAGPNPLRC SAHLSSSGRH GCPLCKDLLA  360
KFPPQSVKMK QPFSAKPWDS SPEMVKKLFQ VIRFVYTHFG TIDVHPFTFD EFAQAFHDKD  420
SLLLGEVHIG LLKLLLLNAE MGSDGVFVPR SSKDCRFLSF LNFVREQEFD VNFWIRSLNS  480
LTWVEILRQV LVASGFGSKQ HMLNRDFFNK EKNQMVKYGL RPRTLKGELF ALLSKAGSGG  540
LKVSVLAKSS EIVDLNVSGT LELEQLICLT LSSDITLFEK IAPSAYRLRV DPQIKGKEDA  600
RSDSEDSGSV DDDEDASSSD DESNGSQKMN LPEHGDRIAR KKEQKNAHGS PNKCSEIDES  660
YPGERWLLGL MEGEYSDLSI DEKLDCLVAL IDIASGAGSV PRLEEPQRVL HNMPRAQPHQ  720
SGGKIKKSTK NLYRSSDESL NGPGNSYSLD CSRQGRSASR RNQDYIMDSE RNDLSGVAHE  780
PQVVLLGSDR RYNSYWLFLG PCRADDPGHR RVYFESSEDG HWEVVDSPQE LLSLLSVLDS  840
RGTREAHLLA SMEKRQACLF EAMKKHVEGG NAIGLPASSD SFRSETSTGD GASPKTSSVS  900
GASPVSDVEN ASVPPDLEDS NLDSSSAIVI ENGKRGDERI LMWDRLQAFD KWIWTSFYSV  960
LTTVKCGKKS FKESLVRCES CHDLYWRDEK HCRICHSTFE VGFDLEEKYA VHAATCREPE  1020
DAHEVPNHKV LPSQLQALKA AIHAIEASMP EVAFTGSWMK SAHKLWVKRL RRTSSLPELL  1080
QVLVDFVGAM DEDWLYKSSS SVSFSSYLDD IIVYFQTMPQ TTSAVALWVV KLDALIAPYL  1140
DKPDTSRALA MKELAQARSQ ASAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G473800.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661208.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A368STB5	0.0	A0A368STB5_SETIT; Uncharacterized protein
STRING	Si033977m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sevir.9G473800.4.p