PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G471000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9178.76 Da PI: 6.2539 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.5e-09 | 2 | 43 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 W+ E e++ +a + +G + W+++a+ +g gRt+ + + ++ Sevir.9G471000.1.p 2 EWSDSENERFERALATYGIDAWERVAAAVGGGRTADDARRHF 43 7**********************************9988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.448 | 1 | 51 | IPR017884 | SANT domain |
CDD | cd00167 | 3.87E-6 | 2 | 43 | No hit | No description |
SuperFamily | SSF46689 | 2.58E-10 | 2 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-7 | 2 | 43 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-6 | 2 | 46 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MEWSDSENER FERALATYGI DAWERVAAAV GGGRTADDAR RHFDHLQEDV GDIESRGRAH 60 DARDARNGNR NNRGRANRPQ T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G471000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984988.1 | 1e-51 | protein RADIALIS-like 3 | ||||
TrEMBL | K4AHE5 | 3e-50 | K4AHE5_SETIT; Uncharacterized protein | ||||
STRING | Si038302m | 5e-51 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G471000.1.p |