PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G469400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 983aa MW: 111567 Da PI: 6.3725

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G469400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9e-19	103	208	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek.d 73 Y++YA+++GF+ ++++ ++ +g +++tf+C+ gk++ +ek++r+ a ++tgCka+l ++ ++ d Sevir.9G469400.1.p 103 LYKAYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTYGGKSRAGAAPsdvpgtryplrskrgaaaQEKKSRRGAAEKTGCKAMLLIRDKRvD 191 6*********999998887..7888********999887799**********9999999999************999 PP FAR1 74 gkwevtkleleHnHela 90 ++w+v+++eleHnH+++ Sevir.9G469400.1.p 192 DRWKVESVELEHNHPCT 208 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-16	103	208	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-23	335	429	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	616	652	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	627	654	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MGVGSKGRAR ASRSQNPSLE SDEEEEARRV KEEIADDLNG EPAEEDDDEE VVVEDEEVVI 60 PSDDEEEDGG GGGDDGFVPR TLEEALVPRV GTVFDSVDEA FALYKAYAYR TGFHAVRRTC 120 HNYEGLRYRS TFTCTYGGKS RAGAAPSDVP GTRYPLRSKR GAAAQEKKSR RGAAEKTGCK 180 AMLLIRDKRV DDRWKVESVE LEHNHPCTPD MVRFLKAYRE MPESAKKKAK ITDEMDGMVE 240 KSLSEIAETR KFPTRPKRGA SGGAAVGSHR FSRIESFVQR FGEDDLTALK KFVETMQCKK 300 PNFIHSWDLD RERRVKNFFW TDSRAQAQYR YFGDVITLDV MYLQHSRSSL PLATLLGVNN 360 HGHLVLLGCG LLSGDTKENY LWLLKRWLNC MNGKPPEAIT TGYSDVIAEA VAEVFPNARH 420 RFCFWHILKK LLENVGRTHE KEAISSRFKE VVYDSVTLTD FEREWGAMVD QYNLKDNEWF 480 SALYSCRKQW APGYVNHSFW AGTSAIRKVE KPDPYFDGVV TKTTLPVFLE QYETTLKGKL 540 EREAYDDLRS YYSRLTLLSG LPFEEQLVEI YTVTMFQAFQ DEIKQLMHVI CKEVDRSGSS 600 ITYMASELIQ GKKVDYTVVY NNSDKDVWCI CRSFPSRGIL CSHALAVLKQ ENVLMLPSKY 660 ILDRWRKDFR ILTSSANTDC TESDRNLGIY DDLYSRGHEY FEDVIDIGAR EPELKEFVLS 720 AMKEAKDRLI RPDHSQPGDQ RVDVNMTVTG PVSADTRVDV NMTSHASALI QGDRRVDANM 780 ASNPPALVHG DTMTSNATAL IHRDRRVEMK MPTTHLIHGE GRVDMNMASP HLMQRERRVD 840 MNMASPHLIQ GDTRVDMNLA SPHFIHSDRR VDMNLASPHL MHGDRRVDMN MASPHLIPGD 900 TRVDMNMVST SQNGMHTFDL VNVNLESGSL PMAATEFMQL HPHPPVYHPK QLLDMRDQVM 960 DANKRPNMET NTYFMGGGMH VG*

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MGVGSKGRAR ASRSQNPSLE SDEEEEARRV KEEIADDLNG EPAEEDDDEE VVVEDEEVVI  60
PSDDEEEDGG GGGDDGFVPR TLEEALVPRV GTVFDSVDEA FALYKAYAYR TGFHAVRRTC  120
HNYEGLRYRS TFTCTYGGKS RAGAAPSDVP GTRYPLRSKR GAAAQEKKSR RGAAEKTGCK  180
AMLLIRDKRV DDRWKVESVE LEHNHPCTPD MVRFLKAYRE MPESAKKKAK ITDEMDGMVE  240
KSLSEIAETR KFPTRPKRGA SGGAAVGSHR FSRIESFVQR FGEDDLTALK KFVETMQCKK  300
PNFIHSWDLD RERRVKNFFW TDSRAQAQYR YFGDVITLDV MYLQHSRSSL PLATLLGVNN  360
HGHLVLLGCG LLSGDTKENY LWLLKRWLNC MNGKPPEAIT TGYSDVIAEA VAEVFPNARH  420
RFCFWHILKK LLENVGRTHE KEAISSRFKE VVYDSVTLTD FEREWGAMVD QYNLKDNEWF  480
SALYSCRKQW APGYVNHSFW AGTSAIRKVE KPDPYFDGVV TKTTLPVFLE QYETTLKGKL  540
EREAYDDLRS YYSRLTLLSG LPFEEQLVEI YTVTMFQAFQ DEIKQLMHVI CKEVDRSGSS  600
ITYMASELIQ GKKVDYTVVY NNSDKDVWCI CRSFPSRGIL CSHALAVLKQ ENVLMLPSKY  660
ILDRWRKDFR ILTSSANTDC TESDRNLGIY DDLYSRGHEY FEDVIDIGAR EPELKEFVLS  720
AMKEAKDRLI RPDHSQPGDQ RVDVNMTVTG PVSADTRVDV NMTSHASALI QGDRRVDANM  780
ASNPPALVHG DTMTSNATAL IHRDRRVEMK MPTTHLIHGE GRVDMNMASP HLMQRERRVD  840
MNMASPHLIQ GDTRVDMNLA SPHFIHSDRR VDMNLASPHL MHGDRRVDMN MASPHLIPGD  900
TRVDMNMVST SQNGMHTFDL VNVNLESGSL PMAATEFMQL HPHPPVYHPK QLLDMRDQVM  960
DANKRPNMET NTYFMGGGMH VG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G469400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066368	0.0	BT066368.1 Zea mays full-length cDNA clone ZM_BFc0009K07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014659999.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	K4A5D1	0.0	K4A5D1_SETIT; Uncharacterized protein
STRING	Si034085m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-83	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.9G469400.1.p