PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G469100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 697aa MW: 76748.8 Da PI: 6.9113 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.3 | 1.1e-27 | 69 | 159 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++ + +++++++ra tr+gCka++++kk gkw+vtk++++HnH Sevir.9G469100.2.p 69 DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDglhSDQKQQERAGTRVGCKAMIMIKKFGPGKWMVTKFVKNHNHG 159 6*******************************************99999999**************************************5 PP | |||||||
2 | FAR1 | 89.8 | 3.8e-28 | 207 | 299 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+ Sevir.9G469100.2.p 207 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvvtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHS 297 9********************************************99998899999**********************************9 PP FAR1 89 la 90 l+ Sevir.9G469100.2.p 298 LS 299 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-25 | 69 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 4.4E-26 | 207 | 299 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MVVMEGTVIR IASESKPGNE LDSLTELPRS METLVAHHHE VEKLIGLEDD TELTPCEGME 60 FESEDAARDF YSTYARNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE TRACDGLHSD 120 QKQQERAGTR VGCKAMIMIK KFGPGKWMVT KFVKNHNHGP VPPRKLDSGP ANQNGDPMEK 180 PHSIEMGPVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRT KKVVTDEGKT KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLSY 300 SKMVPITSNN TSGEVADFTA KSADPNDVKN EGCSAGTQCN PADSLTVLYN NLCQEALKFA 360 EEGSVTEEIY HVAVSALKEA AKKVAEVKRS RPALPNRDLI SESKHDVFQV QTMSTLQCST 420 QVELKTTLSR RPLQESASNL LLVPTNIITD SRLYNRVDNV PLSSDFLKNG RQGRHATEGS 480 FVHFENIKET STQKPQNTSS NQAIHGKDEG IHGSSGETMV AIPAIPLALC MPVTQNLPRS 540 SADGPYRLLA APIEAVPISY CPAEPIRQPQ RGVCALGPFA GVLSELNKPG TGPNSLVHAT 600 ALACGARVVP LEEAASLINA VESKIRSGGA IIAKMPSSNL TSPFPPAIAM SSSSEDEEND 660 HSEPLMVDVD RNCHDQSSDE MKLQSEPSEL ETEADN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G469100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698434.1 | 0.0 | uncharacterized protein LOC101766516 | ||||
TrEMBL | K4A6I7 | 0.0 | K4A6I7_SETIT; Uncharacterized protein | ||||
STRING | Si034492m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-22 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G469100.2.p |