PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G469100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 697aa MW: 76748.8 Da PI: 6.9113

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G469100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.3	1.1e-27	69	159	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++ + +++++++ra tr+gCka++++kk gkw+vtk++++HnH Sevir.9G469100.1.p 69 DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDglhSDQKQQERAGTRVGCKAMIMIKKFGPGKWMVTKFVKNHNHG 159 6*****************************************99999999************************************5 PP
2	FAR1	89.8	3.8e-28	207	299	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+ Sevir.9G469100.1.p 207 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvvtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHS 297 9******************************************99998899999********************************9 PP FAR1 89 la 90 l+ Sevir.9G469100.1.p 298 LS 299 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-25	69	159	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.4E-26	207	299	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MVVMEGTVIR IASESKPGNE LDSLTELPRS METLVAHHHE VEKLIGLEDD TELTPCEGME 60 FESEDAARDF YSTYARNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE TRACDGLHSD 120 QKQQERAGTR VGCKAMIMIK KFGPGKWMVT KFVKNHNHGP VPPRKLDSGP ANQNGDPMEK 180 PHSIEMGPVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRT KKVVTDEGKT KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLSY 300 SKMVPITSNN TSGEVADFTA KSADPNDVKN EGCSAGTQCN PADSLTVLYN NLCQEALKFA 360 EEGSVTEEIY HVAVSALKEA AKKVAEVKRS RPALPNRDLI SESKHDVFQV QTMSTLQCST 420 QVELKTTLSR RPLQESASNL LLVPTNIITD SRLYNRVDNV PLSSDFLKNG RQGRHATEGS 480 FVHFENIKET STQKPQNTSS NQAIHGKDEG IHGSSGETMV AIPAIPLALC MPVTQNLPRS 540 SADGPYRLLA APIEAVPISY CPAEPIRQPQ RGVCALGPFA GVLSELNKPG TGPNSLVHAT 600 ALACGARVVP LEEAASLINA VESKIRSGGA IIAKMPSSNL TSPFPPAIAM SSSSEDEEND 660 HSEPLMVDVD RNCHDQSSDE MKLQSEPSEL ETEADN*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MVVMEGTVIR IASESKPGNE LDSLTELPRS METLVAHHHE VEKLIGLEDD TELTPCEGME  60
FESEDAARDF YSTYARNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE TRACDGLHSD  120
QKQQERAGTR VGCKAMIMIK KFGPGKWMVT KFVKNHNHGP VPPRKLDSGP ANQNGDPMEK  180
PHSIEMGPVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRT KKVVTDEGKT KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLSY  300
SKMVPITSNN TSGEVADFTA KSADPNDVKN EGCSAGTQCN PADSLTVLYN NLCQEALKFA  360
EEGSVTEEIY HVAVSALKEA AKKVAEVKRS RPALPNRDLI SESKHDVFQV QTMSTLQCST  420
QVELKTTLSR RPLQESASNL LLVPTNIITD SRLYNRVDNV PLSSDFLKNG RQGRHATEGS  480
FVHFENIKET STQKPQNTSS NQAIHGKDEG IHGSSGETMV AIPAIPLALC MPVTQNLPRS  540
SADGPYRLLA APIEAVPISY CPAEPIRQPQ RGVCALGPFA GVLSELNKPG TGPNSLVHAT  600
ALACGARVVP LEEAASLINA VESKIRSGGA IIAKMPSSNL TSPFPPAIAM SSSSEDEEND  660
HSEPLMVDVD RNCHDQSSDE MKLQSEPSEL ETEADN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G469100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698434.1	0.0	uncharacterized protein LOC101766516
TrEMBL	K4A6I7	0.0	K4A6I7_SETIT; Uncharacterized protein
STRING	Si034492m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-22	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.9G469100.1.p