PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G459100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 243aa    MW: 25032.4 Da    PI: 5.9324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G459100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-183584255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Sevir.9G459100.1.p 35 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 84
                        59****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9973592IPR001471AP2/ERF domain
SMARTSM003804.5E-353598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-293593IPR001471AP2/ERF domain
PRINTSPR003675.5E-83647IPR001471AP2/ERF domain
PfamPF008471.3E-113684IPR001471AP2/ERF domain
CDDcd000188.80E-183691No hitNo description
SuperFamilySSF541711.18E-193694IPR016177DNA-binding domain
PRINTSPR003675.5E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKNTSNGVA TATAFSDDKA RPESGGVGGK SAARPYKGVR MRSWGSWVSE IRAPNQKRRI  60
WLGSYATPEA AARAYDAALL CLKGSDAVLN FPASSSPTSS SSSPHHHVDT TRHSDPAASS  120
GAMSPRSIQR AAAAAAAAFD AGLISASVDD RCSSSSAGAT TPTSTSLSTL CSADHVREHA  180
TTSSPATASA GSPPEGEELW TDLDAFASPK FMDLVSAGAA PFSSTWEDPE DDGDVMRLWS  240
FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-132392272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G459100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276603e-92KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984707.11e-173ethylene-responsive transcription factor ERF014
TrEMBLK4AJU81e-171K4AJU8_SETIT; Uncharacterized protein
STRINGSi039170m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.17e-21ERF family protein