PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G455900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 378aa MW: 38569.8 Da PI: 10.07

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G455900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7e-40	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GG+lrnvPvGgg+r+nk+ss Sevir.9G455900.1.p 84 PEQALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGSLRNVPVGGGCRRNKRSS 144 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	68	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	86	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.795	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQG QQPRASAGGG DAPLLPVGPA AATAAGPDNS GLPSSSSTAS 60 AAVAAQARPN SMAERARLAR MPQPEQALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR 120 YWTRGGSLRN VPVGGGCRRN KRSSKSSGGS SSSKPYSSAR QLAGPSSSTP SSTPGATGAI 180 IPPSLGSFSH HLPFLGTMHQ PGPNLGLAFS AGLPPLGMQH MDTVDQFPVA SGGGATIGAS 240 LEQWRVQQQP QQQFPFLTGG GILELPPPAM YQLGLDGNNR GGSGSAAAAA FTLGQTSATT 300 ARQEGSMKVE GSKGQDMSLQ RQYMAALRHG SQGVWDGIHG NAGSSGGDGG GNGGSSWPMN 360 IPGFHSSSTG GGNGSGL*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQG QQPRASAGGG DAPLLPVGPA AATAAGPDNS GLPSSSSTAS  60
AAVAAQARPN SMAERARLAR MPQPEQALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR  120
YWTRGGSLRN VPVGGGCRRN KRSSKSSGGS SSSKPYSSAR QLAGPSSSTP SSTPGATGAI  180
IPPSLGSFSH HLPFLGTMHQ PGPNLGLAFS AGLPPLGMQH MDTVDQFPVA SGGGATIGAS  240
LEQWRVQQQP QQQFPFLTGG GILELPPPAM YQLGLDGNNR GGSGSAAAAA FTLGQTSATT  300
ARQEGSMKVE GSKGQDMSLQ RQYMAALRHG SQGVWDGIHG NAGSSGGDGG GNGGSSWPMN  360
IPGFHSSSTG GGNGSGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G455900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582400	0.0	KC582400.1 Sorghum bicolor dof3 protein (dof3) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984738.1	0.0	dof zinc finger protein DOF3.6 isoform X2
TrEMBL	K4ABE0	0.0	K4ABE0_SETIT; Uncharacterized protein
STRING	Si036197m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	6e-36	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Sevir.9G455900.1.p