PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G437500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 373aa    MW: 40386 Da    PI: 7.8002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G437500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08303327227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ktelC+ + r G C+y  rC+FaHg+
  Sevir.9G437500.1.p 303 KTELCNKWER-GGCPYDRRCRFAHGM 327
                         8*********.*************95 PP
2zf-CCCH19.71.6e-06339364126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  C+ fa+   C+yG rC+F H+
  Sevir.9G437500.1.p 339 YKTLACQLFAAASGCPYGHRCHFRHS 364
                         99*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-15298333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-8301332IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619301328IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-9334364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7335365IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-4338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389338366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEGELGFLSR VSSKRGDDRG FGSPTWSSPL GTLLDSPSSC ISESRAGGDG VSGFSSPTWG  60
SPLEKLFNSP SSCVSDDSRV GGNGSGFSSP TWGSPLETLF YSPSSCVSDS RGDGNGSGFS  120
KPKQASPLET LLNSPSSCVS DGRGCGNSSS PRVSKERDSE VQKAERLLRE IAERYDDCFL  180
RLRNATAELA DLRRERIHLG AENLHLSLLL EELEAAEQSK QASAVALNLT LPPRPVQAEA  240
ASGRAPKSIS MRSKGFLSPK QPLRETQPQR LRVRTSPAKE DASEKEKDDG EVEMEASRQG  300
AVKTELCNKW ERGGCPYDRR CRFAHGMEEL RPVIRHPRYK TLACQLFAAA SGCPYGHRCH  360
FRHSLPSTVE TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-15302364467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G437500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186687e-66AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372677e-66AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149597e-66AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126117e-66CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679282.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-117C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLK4AKT50.0K4AKT5_SETIT; Uncharacterized protein
STRINGSi039512m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-34C3H family protein