PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G422800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WOX

Protein Properties

Length: 313aa MW: 32001.5 Da PI: 7.3418

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G422800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.7e-15	38	98	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Sevir.9G422800.1.p 38 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 98 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.9	1.2e-34	37	100	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Sevir.9G422800.1.p 37 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 100 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-14	34	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.256	34	99	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	36	103	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-13	38	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.6E-9	38	105	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEGSSNSPDR QSSGGSPEER GSGGSGSGGR GTGGEPVRSR WTPKPEQILI LESIFNSGMV 60 NPPKDETVRI RKLLERFGAV GDANVFYWFQ NRRSRSRRRQ RQMQAAAAAA AAAASSAAQS 120 SPAASPTVGL PSGAVQYPLA MGGSACQYEQ QASSSSSSGS TGGSSLGLFA LGPGVPGTGA 180 GYFQASCGAS SPLASGLMGD VDSGGGNDDL FAISRQMGFA ESPVAASSSV APSTAGHQQQ 240 YYSCQSPAAT ITVFINGVPM EVPRGPIDLR AMFGQDVMLV HSTGALLPVN DYGILTQSLQ 300 MGESYFLVAR PT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G422800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728413	0.0	KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984518.2	0.0	WUSCHEL-related homeobox 6
Swissprot	A2XG77	1e-114	WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBL	A0A368SRG4	0.0	A0A368SRG4_SETIT; Uncharacterized protein
STRING	Si039112m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	2e-30	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Sevir.9G422800.1.p