PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G421800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 350aa    MW: 38547.5 Da    PI: 6.2401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G421800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.3e-55201471129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+ePwdLp ++k +ekew+fF+++d+ky+tg+r+nrat++gyWkatgkdke
  Sevir.9G421800.1.p  20 LPPGFRFHPTDEEIITHYLTHKALDHRFVS-GVIGEVDLNKCEPWDLPGRAKMGEKEWFFFCHKDRKYPTGTRTNRATETGYWKATGKDKE 109
                         79*************************988.99***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  Sevir.9G421800.1.p 110 IFRGRGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 147
                         ***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-6415170IPR003441NAC domain
PROSITE profilePS5100558.61220170IPR003441NAC domain
PfamPF023653.6E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGQLDL PPGFRFHPTD EEIITHYLTH KALDHRFVSG VIGEVDLNKC  60
EPWDLPGRAK MGEKEWFFFC HKDRKYPTGT RTNRATETGY WKATGKDKEI FRGRGILVGM  120
KKTLVFYRGR APRGEKTGWV MHEFRLEGKL PHALPRSAKD EWAVCKVFNK ELAARTEPAM  180
AAAGAELERI GSLGFISELL DSAELPPLMD PSFGGEVDEV IDFKGVASTS GHAAAAPGTS  240
YLPVKMEEHA PLQYQQQPPM FYSGQYFSLP AVNSGDLTPA IRRYCKAEQV ASGQTTSVLS  300
PSRETGLSTD RNAGGGCAEI SSAVTPSASH QFLHDLDDPL LYVADFWKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5391714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G421800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984514.10.0NAC domain-containing protein 79
SwissprotQ9FK441e-98NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A368SRF40.0A0A368SRF4_SETIT; Uncharacterized protein
STRINGSi035639m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-101Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]