PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G416800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 352aa MW: 37858.1 Da PI: 6.5958 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.8 | 6.3e-10 | 155 | 199 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Sevir.9G416800.1.p 155 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQL 199 9****************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-14 | 151 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.599 | 153 | 216 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-10 | 155 | 209 | No hit | No description |
Pfam | PF00170 | 1.3E-8 | 155 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-11 | 155 | 206 | No hit | No description |
CDD | cd14703 | 5.66E-22 | 156 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MQQHPEPADP PGRAFPPPPA PAPAAARGAY HRRARSEVAF RLPDDLGLGG GAGPDGDGFD 60 EIGSEDDLFS TFMDIEKISS SGPSDRDRDR AAETSSPPRP KHRHSSSVDG SGLFFSPGVG 120 GGAGKDAAAS LAEVMEAKKA MSPEQLAELA AIDPKRAKRI LANRQSAARS KERKARYITE 180 LERKVQTLQT EATTLSAQLT LFQRDTTGLS AENAELKIRL QAMEQQAQLR DALNDALKQE 240 LERLKLATGE TTNTSETYNM RFQHVPYNSS FFLLSQQNTA SHPGSAQLAP PFHPPHPNVP 300 NHQMLSHPHT LPDIMQQDSL GRLQGLDIGK GPLVVKSESS SISASESSST F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G416800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033210 | 0.0 | BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds. | |||
GenBank | BT063263 | 0.0 | BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795608.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-163 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A2S3IQW4 | 0.0 | A0A2S3IQW4_9POAL; Uncharacterized protein | ||||
STRING | Si036380m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 5e-71 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G416800.1.p |
Publications ? help Back to Top | |||
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