PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G385200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1021aa    MW: 114030 Da    PI: 6.4899
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G385200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.2e-56211373118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e +krwl+++ei++iL n++ +++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een+
  Sevir.9G385200.1.p  21 QEaRKRWLRPTEICEILSNYKLFSIAAEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENE 111
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+ywlLee++++ivlvhylevk
  Sevir.9G385200.1.p 112 NFQRRTYWLLEEDFTHIVLVHYLEVK 137
                         ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.72616142IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-8443532IPR013783Immunoglobulin-like fold
CDDcd001020.00291443531No hitNo description
SuperFamilySSF812963.11E-18444530IPR014756Immunoglobulin E-set
PfamPF018331.2E-7444527IPR002909IPT domain
SuperFamilySSF484031.07E-15622737IPR020683Ankyrin repeat-containing domain
CDDcd002042.75E-12624735No hitNo description
Gene3DG3DSA:1.25.40.202.3E-16632738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.059643737IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-6649737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.125676708IPR002110Ankyrin repeat
SMARTSM002480.07676705IPR002110Ankyrin repeat
SMARTSM00248870715744IPR002110Ankyrin repeat
SuperFamilySSF525409.03E-8839896IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791846875IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055847866IPR000048IQ motif, EF-hand binding site
SMARTSM000150.026868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249869893IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011871890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MAENRKFVLP GQPPDFSQIL QEARKRWLRP TEICEILSNY KLFSIAAEPP SRPPSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNH MGPQTMEAAE  180
SPISGQISDY EDTESADNFR ASSRYHPLAE MQQPVDGFMT ENMLYASSST VGSRQGYHGE  240
MLPTTANVDN HSFSHHDIAR MFDNANTGLS SVSRILFDSV PFNEPFTDYS TGFTEPTLHS  300
SFACLEANNL EDSSHLQTFT SEALYTNHLS KEEADALSFA GIPSSEVNGS RCTESSIKHP  360
LLKQSSLDLL TIEPTGLKKH DSFSRWMSKE LKEVVDLGIK STSDAFWSNI ETVKVPDRCN  420
VLTNEQLDVY VVSPSLSQDQ LFSIIDVSPS CAYIGTNTKV SVTGTFLVKK EHVENRKWSC  480
MFGNIEVPAE ILTDGTLRCY APEHQSGRVP FYVTCSNRVA CSEVREFEYR DPDAQYVETS  540
PSQANGVNEM HLHIRLEKLL TLGPDDHGMV VLSSGDEKYE VINAINSLML DAKWSDQESA  600
SANEVVSTAR DQSLKKLVKE KLHHWLICKI NDDGKGPNVL CKEGQGVIHL VAALGYDWAI  660
RPIIVAGVNV NFRDAHGWTA LHWAASSGRE RTIGVLIANG AAAGALTDPT SEFPSGRSPA  720
DLASVNGHKG IAGFLAEAAL TSHLSALTIR ESKDSTVEVC GLPAVEGLTG INSAQLAGED  780
SHAESLEGSL SAVRKSTQAA ARIFQAFRVE SFHRKKIVEY GDDNCGLSDE RTLSLVSLKG  840
QHDPHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQAHV RGHQVRRNYR KVVWTVGIVE  900
KVILRWRRKR PGLRGFRPEK QLEGPSEIQP AKAEDEYDFL HDGRRQAEAR LQRALARVHS  960
MSQYPEAREQ YHRLTTCVAE MKQPMMMQDE MLSEAAGGDV NDFMAGLEDL ICIDDAAMIA  1020
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G385200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984162.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLK4A5A00.0K4A5A0_SETIT; Uncharacterized protein
STRINGSi034054m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1