PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G374700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 529aa    MW: 54790.6 Da    PI: 7.8575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G374700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS204.37e-631525232374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..f 84 
                         ++lL  cA av++g+l++aq+l   l elas +gd+++Rlaa+ + AL++rl    ++  ++++++ + ++ +      + +l+  +l  f
  Sevir.9G374700.1.p 152 EQLLNPCAAAVEAGNLSRAQHLFYVLGELASFSGDANHRLAAHGLHALSRRLPAaVGPAAAASVRVPPCERPTpafagAEPRLFRASLirF 242
                         689*************************************************99677777777755555544444654333333333379* PP

                GRAS  85 sevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLak 167
                         +evsP++ + + +aN aI +a++    + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+v++ ++      +         L +
  Sevir.9G374700.1.p 243 HEVSPWFALPNALANAAIARAAAAGppRPLHVVDLGVSHGVQWPTLLESLTRMPggRAPPSVRLTVVAAGTPPapfsASPPGYDFSPHLLR 333
                         ********************9988878999**********************99656699*******9977667888888899999***** PP

                GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                         +A+++++p+ ++   a      ++++L   pgEal+V+l+++l +        ++er  +L+ v++l+P++vv++e +   ++++ + +f+
  Sevir.9G374700.1.p 334 YAKSINLPLAISR--AA--CLDSVHSL-AAPGEALVVCLQFRLGHAT------ADERAGILNKVRGLNPELVVLSEVDGGGGDGTAAGGFA 413
                         **********998..33..33456888.789**********999987......555789******************************** PP

                GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                           le  + +++s++a +    + r   Er+ll+ e+   va+++a+     e    Wrer+ +aGF++++++++a+++a++llrk++ +++
  Sevir.9G374700.1.p 414 ARLELLWRFLESTSAAF----KGRDGEERRLLEAEAGTSVAAAEAA----GEGRDAWRERMAAAGFEEAAFGDEAVESARSLLRKYDgGWE 496
                         *************9887....6777778888888899999999998....788889*******************************5555 PP

                GRAS 349 yrve.eesgslvlgWkdrpLvsvSaWr 374
                         ++      g++ l Wk +p+ ++S Wr
  Sevir.9G374700.1.p 497 MSAPaGAAGAVALRWKVQPVSFCSLWR 523
                         444423466677**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.216125501IPR005202Transcription factor GRAS
PfamPF035142.4E-60152523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MKPMSCHDQE HPAELAAATS STGFDWLEDS LSFLAADVDI AGGYGWWCNP AAAQQDDIGS  60
VVAHALSPPA PLPTSSSPLA HASPSIASPA VSSPSEPSSK KRKSPAHRAS GHSSSNQRRR  120
AERDRPGGGG NGKKGGSKGG GAGSDRDTRW AEQLLNPCAA AVEAGNLSRA QHLFYVLGEL  180
ASFSGDANHR LAAHGLHALS RRLPAAVGPA AAASVRVPPC ERPTPAFAGA EPRLFRASLI  240
RFHEVSPWFA LPNALANAAI ARAAAAGPPR PLHVVDLGVS HGVQWPTLLE SLTRMPGGRA  300
PPSVRLTVVA AGTPPAPFSA SPPGYDFSPH LLRYAKSINL PLAISRAACL DSVHSLAAPG  360
EALVVCLQFR LGHATADERA GILNKVRGLN PELVVLSEVD GGGGDGTAAG GFAARLELLW  420
RFLESTSAAF KGRDGEERRL LEAEAGTSVA AAEAAGEGRD AWRERMAAAG FEEAAFGDEA  480
VESARSLLRK YDGGWEMSAP AGAAGAVALR WKVQPVSFCS LWRPACSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-3114752529421Protein SHORT-ROOT
5b3h_E6e-3114752529421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G374700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704558.10.0nodulation-signaling pathway 1 protein
TrEMBLK4AMU10.0K4AMU1_SETIT; Uncharacterized protein
STRINGSi040237m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-75GRAS family protein