PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G372900.6.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 193aa    MW: 21118.4 Da    PI: 6.7744
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G372900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA49.91.1e-15157187131
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkld 31 
                         +ep++VNaKQy++Il+RRq+Rakle+++kl 
  Sevir.9G372900.6.p 157 EEPIFVNAKQYHAILRRRQMRAKLEAQNKLV 187
                         69***************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-4155192IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115220.256156192IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-10158187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860161181IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLLREMDGDP FHTMPNYDFL SGNGYSMKQL NCSNSDRDSS STKSEQSRQD LSAVSDGSLN  60
GQHTPTQSGL FFPSENNDSC GKRDQGMVKS VLSFGNPEAD FSPPKFDYSQ PFACASYTAD  120
PYYGGVLTGY SSNSIVRPQI NGATNSRVPL PIEPAAEEPI FVNAKQYHAI LRRRQMRAKL  180
EAQNKLVKAI SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G372900.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984044.11e-137nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984045.11e-137nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLK4ACX11e-135K4ACX1_SETIT; Uncharacterized protein
STRINGSi036728m1e-136(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-18nuclear factor Y, subunit A3