PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G372900.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 249aa MW: 27282.6 Da PI: 9.6755 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 53.5 | 7.6e-17 | 151 | 187 | 1 | 38 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +ep++VNaKQy++Il+RRq+Rakle+++kl k+rk+ Sevir.9G372900.5.p 151 EEPIFVNAKQYHAILRRRQMRAKLEAQNKL-VKGRKEV 187 69****************************.9999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.6E-12 | 149 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 18.282 | 150 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.4E-12 | 152 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 155 | 175 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLLREMDGDP FHTMPNYDFL SGNGYSMKQL NCSNSDRDSS STKSEQSRQD LSAVSDGSLN 60 GQHTPTQSEN NDSCGKRDQG MVKSVLSFGN PEADFSPPKF DYSQPFACAS YTADPYYGGV 120 LTGYSSNSIV RPQINGATNS RVPLPIEPAA EEPIFVNAKQ YHAILRRRQM RAKLEAQNKL 180 VKGRKEVASL TKRSSRSSSS GRRLCLHFTL QQVGCAKWPS AGIYALKTAH LTRLRQALGS 240 QVFQMGVA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G372900.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984046.1 | 1e-135 | nuclear transcription factor Y subunit A-4 isoform X2 | ||||
TrEMBL | K4AD02 | 1e-134 | K4AD02_SETIT; Uncharacterized protein | ||||
STRING | Si036728m | 1e-132 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.2 | 3e-18 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G372900.5.p |