PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G370100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 417aa MW: 43723.9 Da PI: 9.812

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G370100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.8	2e-32	102	160	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l cprC st+tkfCyynnyslsqPr+fCk+CrryWt+GGalr++P + r+++++ Sevir.9G370100.1.p 102 ASGLMCPRCRSTETKFCYYNNYSLSQPRHFCKTCRRYWTHGGALRDLPFSNSVRRRRRN 160 56789***********************************************9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	85	149	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.925	105	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-29	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MMHDMMRRKQ TTKEDQTFST MPYHGRIPTH GGGGTGSGSK EAHRYTQHQL PRLPGAPMAP 60 HLSDTPAEAS ASADDGSAGG SCWVKPGCMM ELARLAKIPQ PASGLMCPRC RSTETKFCYY 120 NNYSLSQPRH FCKTCRRYWT HGGALRDLPF SNSVRRRRRN KPSNNKQTSS KVACCGAFSG 180 STGMSPSSSP SSGATIFSGR VATAATAILK PLEQLLIGGA EHHRAGASRL WFPGHSSQDP 240 VPLGYRHQLG NSRGAATTIR LEHQRYLPQR QPFSLLGYKN GGTAPATSAI FPFSEGAGGA 300 EAASFAGQMH AAISRVRGSA AVTTTELASE MMAGNPTIPS TEMGTLASSP GEFLVGVQGD 360 HDLFHFLGSG SWACGYGSTA GNNGSGGGSS CTAAPGSAWP DPSGFTSSSS GRSTIL*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MMHDMMRRKQ TTKEDQTFST MPYHGRIPTH GGGGTGSGSK EAHRYTQHQL PRLPGAPMAP  60
HLSDTPAEAS ASADDGSAGG SCWVKPGCMM ELARLAKIPQ PASGLMCPRC RSTETKFCYY  120
NNYSLSQPRH FCKTCRRYWT HGGALRDLPF SNSVRRRRRN KPSNNKQTSS KVACCGAFSG  180
STGMSPSSSP SSGATIFSGR VATAATAILK PLEQLLIGGA EHHRAGASRL WFPGHSSQDP  240
VPLGYRHQLG NSRGAATTIR LEHQRYLPQR QPFSLLGYKN GGTAPATSAI FPFSEGAGGA  300
EAASFAGQMH AAISRVRGSA AVTTTELASE MMAGNPTIPS TEMGTLASSP GEFLVGVQGD  360
HDLFHFLGSG SWACGYGSTA GNNGSGGGSS CTAAPGSAWP DPSGFTSSSS GRSTIL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	160	VRRRRRNK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G370100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685501.1	0.0	dof zinc finger protein 1-like
TrEMBL	A0A368SPJ5	0.0	A0A368SPJ5_SETIT; Uncharacterized protein
STRING	Si036341m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22884	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	9e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G370100.1.p