PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G363600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 235aa    MW: 24387.6 Da    PI: 9.8606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G363600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001483105123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cgk F ++  L  H  +H
  Sevir.9G363600.1.p  83 FRCSVCGKAFASHQALGGHKASH 105
                         89************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-680110No hitNo description
PfamPF139123.7E-1182107IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.09283110IPR007087Zinc finger, C2H2
SMARTSM003550.01383105IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-483106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576675.04E-5145171No hitNo description
PfamPF139123.8E-11145169IPR007087Zinc finger, C2H2
SMARTSM003550.65146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411146168IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MWLAHLSDLR TRILTVHSIS IISFCIRPPS MAITHDDYVS LCLMALAAAG GGGQAAATMT  60
TQWPQNTAAC WTAAARERDE LRFRCSVCGK AFASHQALGG HKASHRKPPP AAVPLPLHLH  120
ASSSSSAGGA AASSDGGSSG GQAGRHRCSV CHRSFATGQA LGGHKRCHYW DGLSVSVTAS  180
ASGSGSSVKD FDLNLMPLPA AAAAAAGARR RWGEEEEVQS PLPVRKRRLS GIIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208227RRRWGEEEEVQSPLPVRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G363600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687315e-41EU968731.1 Zea mays clone 323782 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678740.11e-165zinc finger protein ZAT6
RefseqXP_022678741.11e-165zinc finger protein ZAT6
SwissprotQ75KE52e-53ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A368SP841e-166A0A368SP84_SETIT; Uncharacterized protein
STRINGSi037516m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-22zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]