PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G328000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HRT-like

Protein Properties

Length: 575aa MW: 62923 Da PI: 9.2417

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G328000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.5	9.4e-18	309	338	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C ++Pv+gRKRC HKG+R+ Sevir.9G328000.1.p 309 CGVVLEDGSSCLEHPVEGRKRCSLHKGRRV 338 *****************************7 PP
2	HRT-like	53.5	4.1e-17	536	565	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+++ dGs+C+++Pv+gRKRC+ HKG+R Sevir.9G328000.1.p 536 ICGARTADGSPCMNKPVEGRKRCALHKGQR 565 8****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	0.0033	73	179	IPR000305	GIY-YIG nuclease superfamily

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MPGITGPVTS RLKREDCPRT KHDSLFSPWK VLVGPSDWED HSAGKEGVQR YRIRNLPDNF 60 PGLYELGVAG ATDDGVRSRR RDSRGVIVVY LGQADSVRAR LQQYGRSGSH LDTGNSLGSA 120 GKAEVNALAA GPGLFREVFS RGYSVVFRCA QMDNKQEAEK TEAQLLRVFD YAWNKLQNGA 180 CRREEILLKL EQGATSRRSS LLSRVRHLKQ DIFGVKAGIK IKGSGSVNTP PGIMKSMLPR 240 VRTFVGFRPQ PVNSEDSGGE AXDIPWKKIS GXPCGNRQAH RRRSGGHRIK KXDVAKRRTV 300 PIQDSNSFCG VVLEDGSSCL EHPVEGRKRC SLHKGRRVKG SPKCSSTSYP CQAEIPIPYV 360 TEDLDNSDQT REIIESIPRL TEDLDSSDQT QESKISPKNI SKTVEESPRQ SNNIKVEEVK 420 TREAPTEDGT HDASRDACIC DCEEKASHAE PESQEPQPSG RMWFELLKAR KKLASADSSR 480 GSGSQTRDYA APICGAMADN GSSKMVPNAG REICEKDSRI EVAGASFSRS SGWPCICGAR 540 TADGSPCMNK PVEGRKRCAL HKGQRASCTP TPSV*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MPGITGPVTS RLKREDCPRT KHDSLFSPWK VLVGPSDWED HSAGKEGVQR YRIRNLPDNF  60
PGLYELGVAG ATDDGVRSRR RDSRGVIVVY LGQADSVRAR LQQYGRSGSH LDTGNSLGSA  120
GKAEVNALAA GPGLFREVFS RGYSVVFRCA QMDNKQEAEK TEAQLLRVFD YAWNKLQNGA  180
CRREEILLKL EQGATSRRSS LLSRVRHLKQ DIFGVKAGIK IKGSGSVNTP PGIMKSMLPR  240
VRTFVGFRPQ PVNSEDSGGE AXDIPWKKIS GXPCGNRQAH RRRSGGHRIK KXDVAKRRTV  300
PIQDSNSFCG VVLEDGSSCL EHPVEGRKRC SLHKGRRVKG SPKCSSTSYP CQAEIPIPYV  360
TEDLDNSDQT REIIESIPRL TEDLDSSDQT QESKISPKNI SKTVEESPRQ SNNIKVEEVK  420
TREAPTEDGT HDASRDACIC DCEEKASHAE PESQEPQPSG RMWFELLKAR KKLASADSSR  480
GSGSQTRDYA APICGAMADN GSSKMVPNAG REICEKDSRI EVAGASFSRS SGWPCICGAR  540
TADGSPCMNK PVEGRKRCAL HKGQRASCTP TPSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G328000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958167.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	K3ZRX3	0.0	K3ZRX3_SETIT; Uncharacterized protein
STRING	Si029353m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-58	effector of transcription2

Link Out ? help Back to Top
Phytozome	Sevir.9G328000.1.p