PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G326300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 272aa    MW: 29241 Da    PI: 7.2669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G326300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18100150255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a+++a+  l+g
  Sevir.9G326300.1.p 100 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFHLRG 150
                         7********.**********8...4445***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.355100158IPR001471AP2/ERF domain
CDDcd000183.24E-28100159No hitNo description
PfamPF008477.7E-13100150IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23100159IPR016177DNA-binding domain
SMARTSM003801.2E-36100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-32100159IPR001471AP2/ERF domain
PRINTSPR003671.4E-10101112IPR001471AP2/ERF domain
PRINTSPR003671.4E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALLHEHLDI IRAHLLDDPH DAAAAASSED YSASSPSPSP PAAGRRPLPA LSIALPPRTA  60
AVALQQQQLW APPPPPPQII HHQQQEQHCF PGPEEDDFRR YRGVRQRPWG KYAAEIRDPA  120
RKGARVWLGT YDTAVEAARA YDRAAFHLRG SKAILNFPNE VAFGTAARWG PPAAAPRPSA  180
ATAGSNKRAR SPEPALREQD AGCMVREVKK ERVQEPAASC GWDGAVVMAP AAASGGAADF  240
FWEEEELLKG TICSLPPLSP YPQLVHASIC A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27101164669ATERF1
3gcc_A2e-27101164669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G326300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9770887e-93EU977088.1 Zea mays clone 998737 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983639.11e-139ethylene-responsive transcription factor ERF105
TrEMBLA0A368SMX71e-138A0A368SMX7_SETIT; Uncharacterized protein
STRINGPavir.Ib02259.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-26ERF family protein