PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G321800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | STAT | ||||||||
Protein Properties | Length: 712aa MW: 78623.7 Da PI: 6.5921 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 179.2 | 6e-56 | 229 | 347 | 1 | 119 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 l+vvl+nalg+pv kd+evvasL+yad+g++veks dd+e+pLLi+ +G+e+++ +rpl+++rG+a fklkisqLsskcdn+Lfri+f+++ Sevir.9G321800.1.p 229 LEVVLINALGEPV-KDKEVVASLVYADNGTAVEKSrDDSEPPLLITSEGLEYPAISRPLPIIRGCAIFKLKISQLSSKCDNKLFRIQFSTL 318 79**********9.*********************9******************************************************* PP STAT 91 klkkypfleavskpirCisrsrntrsssl 119 ++++ypfl a+sk irCisr+r+ r++++ Sevir.9G321800.1.p 319 HMRRYPFLVAYSKTIRCISRTRTIRPLGS 347 ************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 7.4E-4 | 16 | 142 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 1.07E-6 | 33 | 178 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 1.4E-4 | 604 | 683 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 1.57E-7 | 607 | 691 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.315 | 613 | 711 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MAAPESECGG GDAGYLDLRD VRVEVDPGTA RGGGGGGFAV CFWLYLSSSA RPSSVILHQV 60 TTGDGNKLPF LALGEGNRLL LFPLMTLHRE APAPASSYPW TDTTSLSSTN ECPLEKWFHI 120 GCEVTENAMR LHINGNLIAE AHLCSLSDEQ HHQDHANKIS LFGNDSKLEG YIYNIEVSSV 180 LGTIKEQHAK NPPFKLSIDY SSSDGIEEGD DGIWNIVGGK ASCRRNFILE VVLINALGEP 240 VKDKEVVASL VYADNGTAVE KSRDDSEPPL LITSEGLEYP AISRPLPIIR GCAIFKLKIS 300 QLSSKCDNKL FRIQFSTLHM RRYPFLVAYS KTIRCISRTR TIRPLGSGKR VNSATADETD 360 LLNNGQGLVN ADRVNGRLHS HGQSSVVRFH MPKFSKIEGD GMAKVVESNK ILSQNKHARK 420 MVVSKEAQDV MGTDSSTSNY DSFDSGSSWS GSDGDDIETF SDAVVFRYCL DSTYDRSKFL 480 RGAAPTFNKD DLVKLADQVS LYSGCSHHRN QILMSKRLLR EGADTWSMIS KNNERALWSS 540 AIPGIITKFT DISHSVNRGL SEQDLEVLRG IAGCGEDIGK DEFDRLWYWL YPVAASLTRD 600 KIKKLWDCTS PRWIEGLITV QEAENALRSS RELLKEPGTF VLRFPTTRSW PHPDAGNLVV 660 TYVGSDNSIH HRLLSLDSSV ARAENLQDLL LQEPELSQLG RVDRLPTAIR R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G321800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983603.1 | 0.0 | SH2 domain-containing protein B isoform X1 | ||||
TrEMBL | K4A6F9 | 0.0 | K4A6F9_SETIT; Uncharacterized protein | ||||
STRING | Si034463m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7547 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-158 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G321800.1.p |