PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G314300.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 672aa MW: 76433.8 Da PI: 8.9017 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 43 | 79 | 4 | 42 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 WT +E +++a +++G++ Wk+I++ +g ++++ ++k Sevir.9G314300.5.p 43 WTNDELMCFYKAYHRHGKD-WKKISAAVG-HKSPDMVKA 79 *****************99.*********.***999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-10 | 36 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.998 | 38 | 89 | IPR017884 | SANT domain |
SMART | SM00717 | 9.3E-4 | 39 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-7 | 43 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-5 | 43 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-4 | 43 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF06584 | 3.0E-29 | 490 | 590 | IPR033471 | DIRP domain |
SMART | SM01135 | 1.0E-28 | 490 | 591 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MGPAKVSRTI TKIRIKGYED RQQHEEVPSS VKKEKISDLG PIWTNDELMC FYKAYHRHGK 60 DWKKISAAVG HKSPDMVKAL YAMHRTFLSL PEHQATSMGF IALVTGHCNV LELSSSHRGN 120 GQTIRASGKA KKHGEATQHK VHEAPHPHGS YHAGKIPGFS PSFKKRYYGE LARNSQSHPV 180 GNRTPRIPVI VPADRNAIND ATPEFKNAMS STKRNNDKIN NDRANFSMNE CSPDGRSGIM 240 EATKGVECQA LLETNGDTEI CQTQQPLKKR RMDQTMDRGR ASKVGHETMM EVKEENKPSG 300 LLKQQMSSMF ISADDILILD VLQSLVDEPD KMSKLKINIT SNTLRKSDFT LSESKDEGHS 360 PVDLSKQGKP ITECSASKTK RKRHTKVPAE EINVVHAIDI TEGSSNSDSA RGLEDLPEST 420 ANIFCEVYPT VPREINPEIS MSRRRKMKNK MHRKKKYVMC NEGSDNVEAR KLLHCLSSEF 480 LRRWCTYEWF YSAIDFPWFM DNEFAKYMNH PYLRHISRLA RSEWSIIRSY RGKPRRFSDN 540 FLVVERKQLE DYRKEVRTYY AQLSDGSLDS LPADVARPFS IGQQVIVRHP SSRELCDGKV 600 VMVDQDCCKV QFDNPELGLD LVQDVDCMPV NWLDNLPDNV RSTLDSHDVH NILEMEHVFK 660 VTPSGRILCR Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 441 | 446 | SRRRKM |
2 | 442 | 453 | RRRKMKNKMHRK |
3 | 443 | 454 | RRKMKNKMHRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G314300.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678605.1 | 0.0 | protein ALWAYS EARLY 1 isoform X1 | ||||
Refseq | XP_022678606.1 | 0.0 | protein ALWAYS EARLY 1 isoform X1 | ||||
TrEMBL | A0A368SMP2 | 0.0 | A0A368SMP2_SETIT; Uncharacterized protein | ||||
STRING | Si034207m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 2e-57 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G314300.5.p |