PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G293400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 583aa    MW: 63276.9 Da    PI: 4.5694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G293400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.61.6e-162014611127
                 NAM  11 deelvveyLkkkvegkklelee.v.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                         d+ l+  +L+ k++g+ l+++  + ++++diy ++P +L +      + k+e  +w+fF+  + k++t++rk+r++   +g+W++    ++
  Sevir.9G293400.1.p  20 DDRLL-SFLRLKLAGEALPAAAgAlFHDCDIYAADPATLTAgylpapARKGEGYSWFFFTFVRPKSSTDSRKKRMVGggAGTWHSERAPRA 109
                         55566.89*******99666442359*************8556776544445669*******************87645889********* PP

                 NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                         v++ +g+ vg  + + + ++  ++ +e+tdW m e++
  Sevir.9G293400.1.p 110 VHDGEGNCVGHTQYFSYKRKtGKSCSERTDWYMVEFT 146
                         ***9**************663566779********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6059171IPR003441NAC domain
SuperFamilySSF1019411.18E-2120170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAPFAADTPQ PDDPAPTSSD DRLLSFLRLK LAGEALPAAA GALFHDCDIY AADPATLTAG  60
YLPAPARKGE GYSWFFFTFV RPKSSTDSRK KRMVGGGAGT WHSERAPRAV HDGEGNCVGH  120
TQYFSYKRKT GKSCSERTDW YMVEFTDGQE GDHDRIHGGE PVLVLCKIYK AHSGSRSSSS  180
SSRSARKRKA TEEHADPSSA PLKAKRRLFS SSAPTQLPAS QEQGEAAKVE PEAYHGEIDD  240
HALDDFLLFM KSEFQXDXTS DYXNFSTNPE ASQEQVSSRV TMATSGLELQ SEAAKVEPEA  300
YHGETDDDTV DDLLLYWESQ CKTNSTSDYQ NFSPNPEASA SQSKTSTTHP SSLMSETEMS  360
QAKIGDTSDY LRFWPEPEAS QGMSNSTSDY LKFSPEAEAT ENMTNTAPPS LVMSEPGMTA  420
QGKIGGTSDN LRLWSDLEAF QGMINSPSPS LLTSEPWMTL SFGSEPEVSQ GMIHSTSEYL  480
NFSPKTEALQ KTRTTPRSLL MFEPEVQAPQ GESETSALDW GIQMAGVGTT PVLVHCNDNS  540
TAASCSCSLG WLVGAPPKYD MWSTTGFPSS PSMFGGPALW SC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G293400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961530.10.0uncharacterized protein LOC101760926 isoform X2
TrEMBLA0A368SLT30.0A0A368SLT3_SETIT; Uncharacterized protein
STRINGSi038541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612