PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G286400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 103aa    MW: 11376.6 Da    PI: 6.5039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G286400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-171668156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr+++ +g+++AeI+d       ++ r +lg+f+taeeAa+a+++ + ++ g+
  Sevir.9G286400.1.p 16 TKYRGVRRCP-SGKFAAEIHD----SlrQSMRTWLGTFDTAEEAARAYDRTAYRMQGH 68
                        69********.7*********....44235************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-121668IPR001471AP2/ERF domain
CDDcd000188.15E-241676No hitNo description
SuperFamilySSF541717.85E-211776IPR016177DNA-binding domain
SMARTSM003801.0E-251781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-261776IPR001471AP2/ERF domain
PROSITE profilePS5103220.6661775IPR001471AP2/ERF domain
PRINTSPR003672.1E-81829IPR001471AP2/ERF domain
PRINTSPR003672.1E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEGCGCFDDG KDGSKTKYRG VRRCPSGKFA AEIHDSLRQS MRTWLGTFDT AEEAARAYDR  60
TAYRMQGHLA VLNFPAETHN YHGGGASSQQ VIEPEYLDDK VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-261710114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G286400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685458.18e-55ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-27ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A368SLI43e-69A0A368SLI4_SETIT; Uncharacterized protein
STRINGSi040039m3e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]