PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G269900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 289aa    MW: 30905.2 Da    PI: 8.5854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G269900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19111160255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a++ a+ +l+g
  Sevir.9G269900.1.p 111 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDGAAFRLRG 160
                         59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.25E-30110170No hitNo description
SMARTSM003804.7E-36111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-32111169IPR001471AP2/ERF domain
PROSITE profilePS5103223.314111168IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22111169IPR016177DNA-binding domain
PRINTSPR003675.2E-11112123IPR001471AP2/ERF domain
PfamPF008475.3E-14112160IPR001471AP2/ERF domain
PRINTSPR003675.2E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDRQWRRLHA TARTSNKLLA PPPPLGAMEY RELIQALVTP AKAAPAVPPF MVDTVEESPA  60
MAAVGASCYN LITPAQAAFY YRVGGRMGPA PCVMKRYYGL AAPAAAMAAK LYRGVRQRHW  120
GKWVAEIRLP RNRTRLWLGT YDTAEEAALA YDGAAFRLRG DAARLNFPEL RRGGRHLAPP  180
LHPSVDAKLQ AVTSSALAPA PASPRHESAD VKNEPGCCSG SEASTTTTAA DGADLSPSST  240
GSSPLAKAAA PLPEMQQLDF SEAPWDEADG VALRKYPSLE IDWDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19109168363ATERF1
3gcc_A2e-19109168363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G269900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983222.10.0ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-51RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLK4ADD60.0K4ADD6_SETIT; Uncharacterized protein
STRINGSi036893m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-37ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]