PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G264300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 456aa    MW: 48721.8 Da    PI: 6.1946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G264300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.7e-18121582128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya............tgkrkn 75 
                         p+G+rF Pt+ el+   L + +e+      +l+ ++++++i++++P++L++++k   e++ +yfFs+r+ ++a            ++ r+ 
  Sevir.9G264300.1.p  12 PRGYRFVPTQLELL-SILSQYIETGGaldPPLHGIFHDIRILNYHPEELHERYKDdaEHRYIYFFSERQFQKAgpgvavpedkdhKEPRPV 101
                         89***********9.67999988887777777789**************96655522444669***9998888777777776554455999 PP

                 NAM  76 ratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                         r+++ g Wk +g  + +      +g + g   t+vfy+  a  g +k++W mhe+ +
  Sevir.9G264300.1.p 102 RVARGGGWKPSGGGQVLRLPrkkGGFVAGRMVTMVFYDRVAGGGvVKSNWGMHEFVV 158
                         999*********9887777644455569999******776655526********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-246183IPR003441NAC domain
PROSITE profilePS5100524.811185IPR003441NAC domain
PfamPF023651.5E-1012157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MADGSLTKHG FPRGYRFVPT QLELLSILSQ YIETGGALDP PLHGIFHDIR ILNYHPEELH  60
ERYKDDAEHR YIYFFSERQF QKAGPGVAVP EDKDHKEPRP VRVARGGGWK PSGGGQVLRL  120
PRKKGGFVAG RMVTMVFYDR VAGGGVVKSN WGMHEFVVPV DQEMTSPPTK YTRFHDLALY  180
RLYILKSGDM ESDNGAAGSS SQMMPKGYDP YAPSTSVAPC PPLQPSGIFT GNKALAAGAS  240
TSHMPPPPPQ QQQLPSAQHA QYYHHQHAFV GATAAGAGAQ PHVHNMPVLG AGLPGNLRQF  300
AVPPAPAPVP PAPANPAAAH QAPTAAMHGA GQDTGHFGAK CSPSPAPAIE SSSAEQHATA  360
TEEPAHAQFA DCVRPMEAAA PQPPLEDIAP GVKDEGMAVA DDYGGIGMPD WNNFDFTPLD  420
DSFPELEFTM EELLGCSMLD ESLAPGGLHS RLLNC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G264300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967494.11e-123NAC domain-containing protein 48
TrEMBLA0A368SKQ50.0A0A368SKQ5_SETIT; Uncharacterized protein
STRINGSi039245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-10NAC domain containing protein 102