PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G254400.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C3H

Protein Properties

Length: 721aa MW: 83290.6 Da PI: 9.5068

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G254400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	696	719	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr++++ G+C+yG+ C ++H+ Sevir.9G254400.3.p 696 PRPCRYYYKQGWCPYGEGCWYSHD 719 69*****************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	9.16E-6	118	158	No hit	No description
Gene3D	G3DSA:1.10.720.30	7.3E-7	118	158	IPR003034	SAP domain
Pfam	PF02037	3.8E-7	123	157	IPR003034	SAP domain
PROSITE profile	PS50103	14.906	693	720	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0083	693	720	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	694	719	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-5	695	719	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-6	695	719	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MAATAGGVTR AGHLPRQEDR REGDEGSVES EEEEEVESDD EGSEASSPSD LGEPDAGSDE 60 DPTFDPDADG DLEVEAVLRA RMSRMSISAS ARKGRKGAAV LKMGKEEIDL LAMVDRLKQD 120 DQLEKLKVYE CKAYLRMHKL RLTGKKEVLL NRIREHIEVK NNGEEKYPVS NFVLNCKGDA 180 CKGDVVIFEQ NIYRRKKGAP REVKGRLCGQ RTNAGRIIKE SYGTAKQQHT FTIEILWSKG 240 YKPWPPLHPL LIKGRNLYKD KTMRQPWPDE EERNRVIQEK HERGDVARKS RAARIHEKEI 300 EKLSRLKRNR MKDKIKEQQN MNQKQPQELK QKVESTNTVQ QRVGERKGPS PQNGEPGNTR 360 QQHISSKAIS THHNEVFPQM GATRNFQQEF NGNQVSSNQH GGPQPFSEPT HTQQMFKDSH 420 HHHSYQQRNE VLSQEVAMIT SRKAFLGRQA PSQHNGGSGS TKHHPISSKP TPSTFKYPQQ 480 PPKHQNHNEE DGPKRTYREH HHQNNADHST EYDESSFHPQ GKFTQHASPY QHGSNFHQNA 540 PGSHQAHQPQ RPRNQHQSKA YYATKYNDSF QPQGKSTHHA NAYQHSSSSH QYAQANHRVH 600 QPLRPRNQDF NSSDPSYGQD YHHQGCHDYR GITRGQYHPQ QSQNQNYYSR RPMTQDQYLT 660 QQNHHPNYND HRKTNQKQYH PRQNQPQQFL EQQPQPRPCR YYYKQGWCPY GEGCWYSHDI 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MAATAGGVTR AGHLPRQEDR REGDEGSVES EEEEEVESDD EGSEASSPSD LGEPDAGSDE  60
DPTFDPDADG DLEVEAVLRA RMSRMSISAS ARKGRKGAAV LKMGKEEIDL LAMVDRLKQD  120
DQLEKLKVYE CKAYLRMHKL RLTGKKEVLL NRIREHIEVK NNGEEKYPVS NFVLNCKGDA  180
CKGDVVIFEQ NIYRRKKGAP REVKGRLCGQ RTNAGRIIKE SYGTAKQQHT FTIEILWSKG  240
YKPWPPLHPL LIKGRNLYKD KTMRQPWPDE EERNRVIQEK HERGDVARKS RAARIHEKEI  300
EKLSRLKRNR MKDKIKEQQN MNQKQPQELK QKVESTNTVQ QRVGERKGPS PQNGEPGNTR  360
QQHISSKAIS THHNEVFPQM GATRNFQQEF NGNQVSSNQH GGPQPFSEPT HTQQMFKDSH  420
HHHSYQQRNE VLSQEVAMIT SRKAFLGRQA PSQHNGGSGS TKHHPISSKP TPSTFKYPQQ  480
PPKHQNHNEE DGPKRTYREH HHQNNADHST EYDESSFHPQ GKFTQHASPY QHGSNFHQNA  540
PGSHQAHQPQ RPRNQHQSKA YYATKYNDSF QPQGKSTHHA NAYQHSSSSH QYAQANHRVH  600
QPLRPRNQDF NSSDPSYGQD YHHQGCHDYR GITRGQYHPQ QSQNQNYYSR RPMTQDQYLT  660
QQNHHPNYND HRKTNQKQYH PRQNQPQQFL EQQPQPRPCR YYYKQGWCPY GEGCWYSHDI  720
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G254400.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986580.2	0.0	zinc finger CCCH domain-containing protein 62
Swissprot	Q338N2	0.0	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	K4AMX1	0.0	K4AMX1_SETIT; Uncharacterized protein
STRING	Si040267m	0.0	(Setaria italica)

Link Out ? help Back to Top
Phytozome	Sevir.9G254400.3.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]