PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G254400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 719aa MW: 83020.3 Da PI: 9.4524 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 694 | 717 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr++++ G+C+yG+ C ++H+ Sevir.9G254400.2.p 694 PRPCRYYYKQGWCPYGEGCWYSHD 717 69*****************99996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF68906 | 8.97E-6 | 118 | 158 | No hit | No description |
Gene3D | G3DSA:1.10.720.30 | 7.3E-7 | 118 | 158 | IPR003034 | SAP domain |
Pfam | PF02037 | 3.8E-7 | 123 | 157 | IPR003034 | SAP domain |
SMART | SM00356 | 0.0083 | 691 | 718 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.906 | 691 | 718 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 692 | 717 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-5 | 693 | 717 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-6 | 693 | 717 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 719 aa Download sequence Send to blast |
MAATAGGVTR AGHLPRQEDR REGDEGSVES EEEEEVESDD EGSEASSPSD LGEPDAGSDE 60 DPTFDPDADG DLEVEAVLRA RMSRMSISAS ARKGRKGAAV LKMGKEEIDL LAMVDRLKQD 120 DQLEKLKVYE CKAYLRMHKL RLTGKKEVLL NRIREHIEVK NNGEEKYPVS NFVLNCKGDA 180 CKGDVVIFEQ NIYRRKKGAP REVKGRLCGQ RTNAGRIIKE SYGTAKQQHT FTIEILWSKG 240 YKPWPPLHPL LIKGRNLYKD KTMRQPWPDE EERNRVIQEK HERGDVARKS RAARIHEKEI 300 EKLSRLKRMK DKIKEQQNMN QKQPQELKQK VESTNTVQQR VGERKGPSPQ NGEPGNTRQQ 360 HISSKAISTH HNEVFPQMGA TRNFQQEFNG NQVSSNQHGG PQPFSEPTHT QQMFKDSHHH 420 HSYQQRNEVL SQEVAMITSR KAFLGRQAPS QHNGGSGSTK HHPISSKPTP STFKYPQQPP 480 KHQNHNEEDG PKRTYREHHH QNNADHSTEY DESSFHPQGK FTQHASPYQH GSNFHQNAPG 540 SHQAHQPQRP RNQHQSKAYY ATKYNDSFQP QGKSTHHANA YQHSSSSHQY AQANHRVHQP 600 LRPRNQDFNS SDPSYGQDYH HQGCHDYRGI TRGQYHPQQS QNQNYYSRRP MTQDQYLTQQ 660 NHHPNYNDHR KTNQKQYHPR QNQPQQFLEQ QPQPRPCRYY YKQGWCPYGE GCWYSHDI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G254400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986580.2 | 0.0 | zinc finger CCCH domain-containing protein 62 | ||||
Swissprot | Q338N2 | 0.0 | C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62 | ||||
TrEMBL | A0A368SKH2 | 0.0 | A0A368SKH2_SETIT; Uncharacterized protein | ||||
STRING | Si040267m | 0.0 | (Setaria italica) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G254400.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|